RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1041773", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 9 ✖

tax_phylum 1

  • Nitrososphaerota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1041773 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1445028 1445028 PRJNA1041773_P_NODE_47122_length_311_cov_0.840336_g46789_i0 PRJNA1041773 47122 311 0.840336 2.61344496 Candidatus Nitrosopelagicus brevis 1410606 Archaea Archaea 442 1.4799999999999995e-119   NTclustered gi|742120812|gb|CP007026.1| 1410606 g46789 i0 92.628 2.0064308681672 312 15 100 4 1 311 1043496 1043192 Candidatus Nitrosopelagicus brevis strain CN25, complete genome blastn 624 442 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosopelagicus Candidatus Nitrosopelagicus brevis
4836497 4836497 PRJNA1041773_P_NODE_43704_length_321_cov_3.959677_g43371_i0 PRJNA1041773 43704 321 3.959677 12.71056317 Candidatus Nitrosomarinus 1993653 Archaea Archaea 593 3.9899999999999986e-165   NTclustered gi|663499833|gb|KF900318.1| 1455885 g43371 i0 100 50.4236760124611 321 0 100 0 1 321 14999 15319 Uncultured marine thaumarchaeote AD1000_06_F06 genomic sequence blastn 16186 593 1 Archaea   Thermoproteati Nitrososphaerota         uncultured marine thaumarchaeote AD1000_06_F06
4836685 4836685 PRJNA1041773_P_NODE_71624_length_259_cov_2.376344_g71291_i0 PRJNA1041773 71624 259 2.376344 6.15473096 Candidatus Nitrosomarinus 1993653 Archaea Archaea 435 2e-117   NTclustered gi|663499833|gb|KF900318.1| 1455885 g71291 i0 96.911 27.984555984556 259 8 100 0 1 259 15285 15027 Uncultured marine thaumarchaeote AD1000_06_F06 genomic sequence blastn 7248 435 1 Archaea   Thermoproteati Nitrososphaerota         uncultured marine thaumarchaeote AD1000_06_F06
10373939 10373939 PRJNA1041773_P_NODE_70909_length_260_cov_3.197861_g70576_i0 PRJNA1041773 70909 260 3.197861 8.3144386 Candidatus Nitrosopelagicus brevis 1410606 Archaea Archaea 407 4.39e-109   NTclustered gi|742120812|gb|CP007026.1| 1410606 g70576 i0 100 63.2769230769231 220 0 100 0 41 260 482324 482105 Candidatus Nitrosopelagicus brevis strain CN25, complete genome blastn 16452 407 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosopelagicus Candidatus Nitrosopelagicus brevis
18022644 18022644 PRJNA1041773_P_NODE_75595_length_253_cov_1.711111_g75262_i0 PRJNA1041773 75595 253 1.711111 4.32911083 uncultured marine thaumarchaeote SAT1000_10_G09 1456375 Archaea Archaea 390 4.28e-104   NTclustered gi|663532869|gb|KF901217.1| 1456375 g75262 i0 94.8 24.6126482213439 250 13 99 0 1 250 25289 25538 Uncultured marine thaumarchaeote SAT1000_10_G09 genomic sequence blastn 6227 390 1 Archaea   Thermoproteati Nitrososphaerota         uncultured marine thaumarchaeote SAT1000_10_G09
23960633 23960633 PRJNA1041773_P_NODE_23399_length_429_cov_6.005618_g23068_i0 PRJNA1041773 23399 429 6.005618 25.76410122 Candidatus Nitrosomarinus 1993653 Archaea Archaea 793 0   NTclustered gi|1196088602|gb|CP021324.1| 1898749 g23068 i0 100 56.4009324009324 429 0 100 0 1 429 509592 510020 Candidatus Nitrosomarinus catalina strain SPOT01 chromosome, complete genome blastn 24196 793 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalinensis
26813731 26813731 PRJNA1041773_P_NODE_8461_length_706_cov_1.545024_g8141_i0 PRJNA1041773 8461 706 1.545024 10.90786944 Nitrososphaeria archaeon 2268198 Archaea Archaea 221 4.4e-66   NR MBC7091228.1 2268198 g8141 i0 100 0.446175637393768 105 0 44.6 0 702 388 83 187 MBC7091228.1 DNA cytosine methyltransferase [Nitrososphaeria archaeon] diamond 315 221 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria       Nitrososphaeria archaeon
27256437 27256437 PRJNA1041773_P_NODE_91763_length_245_cov_0.895349_g91430_i0 PRJNA1041773 91763 245 0.895349 2.19360505 Nitrosopumilus sp. 2024843 Archaea Archaea 57.4 2.69e-7   NR MDC3254044.1 2024843 g91430 i0 43.8 1.08979591836735 89 31 95.5 3 7 240 117 197 MDC3254044.1 hypothetical protein [Nitrosopumilus sp.] diamond 267 57.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
31995057 31995057 PRJNA1041773_P_NODE_65398_length_270_cov_1.218274_g65065_i0 PRJNA1041773 65398 270 1.218274 3.2893398 Nitrososphaerota archaeon 2026795 Archaea Archaea 63.9 1.76e-9   NR MEM2987122.1 2026795 g65065 i0 43 0.877777777777778 79 39 87.8 1 243 7 74 146 MEM2987122.1 DEAD/DEAH box helicase family protein [Nitrososphaerota archaeon] diamond 237 63.9 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;