RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1041773" and tax_phylum = "Atribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1041773 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
170488 170488 PRJNA1041773_P_NODE_55521_length_289_cov_0.976852_g55188_i0 PRJNA1041773 55521 289 0.976852 2.82310228 Thermatribacter velox 3039681 Bacteria Bacteria 276 1.46e-69   NTclustered gi|2719065861|gb|CP121689.1| 3039681 g55188 i0 100 1.92387543252595 149 0 100 0 1 149 399077 399225 Thermatribacter velox strain B11 chromosome, complete genome blastn 556 276 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Thermatribacteraceae Thermatribacter Thermatribacter velox
3559347 3559347 PRJNA1041773_P_NODE_80283_length_250_cov_0.870056_g79950_i0 PRJNA1041773 80283 250 0.870056 2.17514 Atribacterales 2847775 Bacteria Bacteria 455 1.48e-123   NTclustered gi|2719065861|gb|CP121689.1| 3039681 g79950 i0 99.6 2 250 0 100 1 1 250 2152663 2152911 Thermatribacter velox strain B11 chromosome, complete genome blastn 500 455 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Thermatribacteraceae Thermatribacter Thermatribacter velox

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;