RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1041773" and tax_phylum = "Artverviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1041773 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21847015 21847015 PRJNA1041773_P_NODE_28518_length_391_cov_1.283019_g28187_i0 PRJNA1041773 28518 391 1.283019 5.01660429 Gammaretrovirus murleu 3428959 Viruses Viruses 678 0   NTclustered gi|1167936530|gb|KY574504.1| 11786 g28187 i0 98.201 99.9360613810742 389 6 99 1 4 391 6376 5988 Murine leukemia virus isolate AKR13, complete genome blastn 39075 678 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
23960973 23960973 PRJNA1041773_P_NODE_69239_length_263_cov_2.294737_g68906_i0 PRJNA1041773 69239 263 2.294737 6.03515831 root 1 Root_unresolved Root_unresolved 486 5.5499999999999986e-133   NTclustered gi|2787679944|gb|PQ144805.1| 11676 g68906 i0 100 100 263 0 100 0 1 263 853 591 HIV-1 isolate Hu_NL_LA_M3171 from USA gag protein (gag) and pol protein (pol) genes, partial cds blastn 26300 486 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
27572305 27572305 PRJNA1041773_P_NODE_51744_length_298_cov_0.920000_g51411_i0 PRJNA1041773 51744 298 0.92 2.7416 Spiretrovirus nemertoderma9428 3117326 Viruses Viruses 116 1.08e-27   NR DBA49513.1 3117326 g51411 i0 72.2 2.24496644295302 72 20 72.5 0 3 218 900 971 DBA49513.1 MAG TPA_asm: Gag-Pol [Spiretrovirus nemertoderma9428] diamond 669 116 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus nemertoderma9428
31836636 31836636 PRJNA1041773_P_NODE_31197_length_375_cov_1.049669_g30865_i0 PRJNA1041773 31197 375 1.049669 3.93625875 Spiretrovirus nemertoderma9428 3117326 Viruses Viruses 57.4 1.19e-6   NR DBA49514.1 3117326 g30865 i0 65.6 0.256 32 11 25.6 0 150 245 291 322 DBA49514.1 MAG TPA_asm: Spike [Spiretrovirus nemertoderma9428] diamond 96 57.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus nemertoderma9428

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;