RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1041773" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1041773 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1445804 1445804 PRJNA1041773_P_NODE_98882_length_242_cov_0.911243_g98549_i0 PRJNA1041773 98882 242 0.911243 2.20520806 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|1270518831|ref|XM_022955390.1| 5861 g98549 i0 100 0.115702479338843 28 0 12 0 46 73 125 98 Plasmodium yoelii conserved Plasmodium protein, unknown function (PY17X_0615800), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
7386042 7386042 PRJNA1041773_P_NODE_19566_length_469_cov_7.479798_g19236_i0 PRJNA1041773 19566 469 7.479798 35.08025262 Besnoitia 94642 SAR_Eukaryotes SAR_Eukaryotes 213 1.98e-50   NTclustered gi|81366051|gb|DQ227418.1| 94643 g19236 i0 87.701 43.3752665245203 187 18 39 5 231 414 4426 4610 Besnoitia besnoiti from Spain 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20343 213 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
27911382 27911382 PRJNA1041773_P_NODE_87225_length_247_cov_0.885057_g86892_i0 PRJNA1041773 87225 247 0.885057 2.18609079 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0201   NR WBY60028.1 73239 g86892 i0 53.7 2.48987854251012 41 14 49.8 3 187 65 163 198 WBY60028.1 plasmepsin VIII [Plasmodium yoelii yoelii] diamond 615 43.9 0.990888382687927 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
30667126 30667126 PRJNA1041773_P_NODE_87313_length_247_cov_0.885057_g86980_i0 PRJNA1041773 87313 247 0.885057 2.18609079 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 51.6 2.97e-5   NR SBT55483.1 864142 g86980 i0 57.4 0.65587044534413 54 23 65.6 0 196 35 56 109 SBT55483.1 STP1 protein [Plasmodium ovale wallikeri] diamond 162 51.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;