RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1041773" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1041773 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5273914 5273914 PRJNA1041773_P_NODE_96705_length_243_cov_0.905882_g96372_i0 PRJNA1041773 96705 243 0.905882 2.20129326 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 438 1.4399999999999996e-118   NTclustered gi|2028889048|gb|CP072378.1| 712362 g96372 i0 99.177 7.94650205761317 243 2 100 0 1 243 788914 789156 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 1931 438 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221
17586388 17586388 PRJNA1041773_P_NODE_60934_length_278_cov_1.375610_g60601_i0 PRJNA1041773 60934 278 1.37561 3.8241958 Fusobacterium 848 Bacteria Bacteria 52.8 0.026   NTclustered gi|2704996929|gb|CP077149.1| 851 g60601 i0 100 0.402877697841727 28 0 10 0 62 89 581543 581516 Fusobacterium nucleatum strain KCOM2013 chromosome, complete genome blastn 112 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
18022906 18022906 PRJNA1041773_P_NODE_92495_length_245_cov_0.773256_g92162_i0 PRJNA1041773 92495 245 0.773256 1.8944772 Ilyobacter polytropus 167642 Bacteria Bacteria 52.8 0.022   NTclustered gi|309749018|gb|CP002282.1| 572544 g92162 i0 100 0.114285714285714 28 0 11 0 132 159 292275 292302 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter polytropus
32406446 32406446 PRJNA1041773_P_NODE_64659_length_271_cov_1.686869_g64326_i0 PRJNA1041773 64659 271 1.686869 4.57141499 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 180 6.98e-53   NR MBP6408967.1 2053555 g64326 i0 100 0.985239852398524 89 0 98.5 0 269 3 102 190 MBP6408967.1 TolC family protein [Fusobacteriaceae bacterium] diamond 267 180 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;