RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1041773" and tax_clade = "Pyramimonas subgenus I"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Pyramimonas subgenus I · 1 ✖

bioproject 1

  • PRJNA1041773 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2721152 2721152 PRJNA1041773_P_NODE_69863_length_262_cov_2.190476_g69530_i0 PRJNA1041773 69863 262 2.190476 5.73904712 Pyramimonas olivacea 36892 Plants Plants 407 4.43e-109   NTclustered gi|371782121|emb|HE610153.1| 36892 g69530 i0 94.656 100.507633587786 262 14 100 0 1 262 2590 2329 Pyramimonas olivacea 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M1668 blastn 26333 407 1 Eukaryota Pyramimonas subgenus I Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Pyramimonas Pyramimonas olivacea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;