contig_metadata
14 rows where bioproject = "PRJNA1041773", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2721499 | 2721499 | PRJNA1041773_P_NODE_92403_length_245_cov_0.883721_g92070_i0 | PRJNA1041773 | 92403 | 245 | 0.883721 | 2.16511645 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 119 | 2.15e-22 | NTclustered | gi|2518556548|emb|OX638380.1| | 412056 | g92070 | i0 | 80.519 | 5.77959183673469 | 154 | 30 | 63 | 0 | 8 | 161 | 3347427 | 3347580 | MAG: uncultured Verrucomicrobiae bacterium isolate efd5e50e-5b6a-4a0f-a0a2-e496bae301b3 genome assembly, chromosome: 1 | blastn | 1416 | 119 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 10374154 | 10374154 | PRJNA1041773_P_NODE_85349_length_248_cov_0.880000_g85016_i0 | PRJNA1041773 | 85349 | 248 | 0.88 | 2.1824 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 52.8 | 0.022 | NTclustered | gi|2051370031|gb|CP072028.1| | 239935 | g85016 | i0 | 100 | 0.225806451612903 | 28 | 0 | 11 | 0 | 75 | 102 | 432415 | 432442 | Akkermansia muciniphila strain Akk1756 chromosome, complete genome | blastn | 56 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 10374356 | 10374356 | PRJNA1041773_P_NODE_98569_length_242_cov_0.911243_g98236_i0 | PRJNA1041773 | 98569 | 242 | 0.911243 | 2.20520806 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 207 | 4.4e-49 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g98236 | i0 | 82.591 | 4.98760330578512 | 247 | 31 | 99 | 8 | 2 | 242 | 2602674 | 2602434 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 1207 | 207 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 | |
| 16310970 | 16310970 | PRJNA1041773_P_NODE_62893_length_274_cov_2.059701_g62560_i0 | PRJNA1041773 | 62893 | 274 | 2.059701 | 5.64358074 | Prosthecobacter sp. | 1965333 | Bacteria | Bacteria | 155 | 7.399999999999998e-44 | NR | WP_409217702.1 | 1965333 | g62560 | i0 | 88.9 | 3.94160583941606 | 90 | 10 | 98.5 | 0 | 272 | 3 | 83 | 172 | WP_409217702.1 dihydrodipicolinate synthase family protein [Prosthecobacter sp.] | diamond | 1080 | 155 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter sp. | |
| 18022849 | 18022849 | PRJNA1041773_P_NODE_89055_length_246_cov_0.890173_g88722_i0 | PRJNA1041773 | 89055 | 246 | 0.890173 | 2.18982558 | uncultured Opitutaceae bacterium | 333967 | Bacteria | Bacteria | 135 | 2.14e-27 | NTclustered | gi|2518551946|emb|OX638348.1| | 333967 | g88722 | i0 | 92.632 | 30.2764227642276 | 95 | 6 | 38 | 1 | 151 | 244 | 427402 | 427308 | MAG: uncultured Opitutaceae bacterium isolate b1b57f99-08c0-43d1-969e-fd0ef39b1292 genome assembly, chromosome: 1 | blastn | 7448 | 135 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | uncultured Opitutaceae bacterium | ||
| 24396921 | 24396921 | PRJNA1041773_P_NODE_80160_length_250_cov_0.870056_g79827_i0 | PRJNA1041773 | 80160 | 250 | 0.870056 | 2.17514 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 170 | 1.8099999999999994e-48 | NR | KAB2674814.1 | 2026799 | g79827 | i0 | 98.8 | 0.996 | 83 | 1 | 99.6 | 0 | 2 | 250 | 196 | 278 | KAB2674814.1 MAG: citramalate synthase [Verrucomicrobiota bacterium] | diamond | 249 | 170 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 26718261 | 26718261 | PRJNA1041773_P_NODE_79901_length_250_cov_0.870056_g79568_i0 | PRJNA1041773 | 79901 | 250 | 0.870056 | 2.17514 | Verrucomicrobiaceae bacterium | 2026800 | Bacteria | Bacteria | 86.7 | 1.42e-17 | NR | MBX7208200.1 | 2026800 | g79568 | i0 | 71.9 | 3.312 | 64 | 18 | 76.8 | 0 | 57 | 248 | 1503 | 1566 | MBX7208200.1 autotransporter-associated beta strand repeat-containing protein [Verrucomicrobiaceae bacterium] | diamond | 828 | 86.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Verrucomicrobiaceae bacterium | ||
| 27003393 | 27003393 | PRJNA1041773_P_NODE_72802_length_257_cov_2.945652_g72469_i0 | PRJNA1041773 | 72802 | 257 | 2.945652 | 7.57032564 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 43.9 | 0.00213 | NR | MEC7236316.1 | 2026799 | g72469 | i0 | 46.9 | 0.571984435797665 | 49 | 26 | 57.2 | 0 | 19 | 165 | 25 | 73 | MEC7236316.1 hypothetical protein [Verrucomicrobiota bacterium] | diamond | 147 | 43.9 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 28677555 | 28677555 | PRJNA1041773_P_NODE_80427_length_250_cov_0.870056_g80094_i0 | PRJNA1041773 | 80427 | 250 | 0.870056 | 2.17514 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 156 | 3.18e-42 | NR | MEM7144846.1 | 2026799 | g80094 | i0 | 88 | 1.992 | 83 | 10 | 99.6 | 0 | 249 | 1 | 373 | 455 | MEM7144846.1 PBP1A family penicillin-binding protein [Verrucomicrobiota bacterium] | diamond | 498 | 156 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 29025111 | 29025111 | PRJNA1041773_P_NODE_83348_length_249_cov_0.869318_g83015_i0 | PRJNA1041773 | 83348 | 249 | 0.869318 | 2.16460182 | Rubritalea squalenifaciens | 407226 | Bacteria | Bacteria | 86.3 | 1.98e-17 | NR | WP_143185317.1 | 407226 | g83015 | i0 | 50.6 | 1.87951807228916 | 81 | 39 | 97.6 | 1 | 7 | 249 | 302 | 381 | WP_143185317.1 YbcC family protein [Rubritalea squalenifaciens] | diamond | 468 | 86.3 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Rubritaleaceae | Rubritalea | Rubritalea squalenifaciens | |
| 29237861 | 29237861 | PRJNA1041773_P_NODE_62529_length_275_cov_1.475248_g62196_i0 | PRJNA1041773 | 62529 | 275 | 1.475248 | 4.056932 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 99.4 | 2.05e-22 | NR | MDA0577526.1 | 2026799 | g62196 | i0 | 52.7 | 5.86909090909091 | 91 | 43 | 99.3 | 0 | 2 | 274 | 255 | 345 | MDA0577526.1 glycosyltransferase family 4 protein [Verrucomicrobiota bacterium] | diamond | 1614 | 99.8 | 0.995991983967936 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 29403657 | 29403657 | PRJNA1041773_P_NODE_69509_length_263_cov_1.315789_g69176_i0 | PRJNA1041773 | 69509 | 263 | 1.315789 | 3.46052507 | Chthoniobacteraceae bacterium | 2811408 | Bacteria | Bacteria | 112 | 8.020000000000001e-27 | NR | MEQ1854657.1 | 2811408 | g69176 | i0 | 71.6 | 0.844106463878327 | 74 | 21 | 84.4 | 0 | 223 | 2 | 1 | 74 | MEQ1854657.1 diguanylate cyclase [Chthoniobacteraceae bacterium] | diamond | 222 | 112 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacteraceae bacterium | ||
| 30027317 | 30027317 | PRJNA1041773_P_NODE_52291_length_296_cov_2.116592_g51958_i0 | PRJNA1041773 | 52291 | 296 | 2.116592 | 6.26511232 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 66.2 | 3.71e-10 | NR | OHE72203.1 | 1802430 | g51958 | i0 | 38.6 | 2.61486486486486 | 83 | 51 | 84.1 | 0 | 294 | 46 | 113 | 195 | OHE72203.1 MAG: hypothetical protein A2007_06005 [Verrucomicrobia bacterium GWC2_42_7] | diamond | 774 | 66.6 | 0.993993993993994 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobia bacterium GWC2_42_7 | |||||
| 30920091 | 30920091 | PRJNA1041773_P_NODE_57854_length_284_cov_1.459716_g57521_i0 | PRJNA1041773 | 57854 | 284 | 1.459716 | 4.14559344 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 105 | 1.24e-24 | NR | MBM3831123.1 | 2026799 | g57521 | i0 | 75.4 | 2.87323943661972 | 69 | 14 | 72.9 | 1 | 209 | 3 | 17 | 82 | MBM3831123.1 zinc ABC transporter substrate-binding protein [Verrucomicrobiota bacterium] | diamond | 816 | 105 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;