RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1041773", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1041773 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22685489 22685489 PRJNA1041773_P_NODE_76298_length_252_cov_1.720670_g75965_i0 PRJNA1041773 76298 252 1.72067 4.3360884 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 110 7.200000000000001e-28   NR HEX8386459.1 2838334 g75965 i0 72.6 3 84 22 98.8 1 250 2 37 120 HEX8386459.1 SDR family NAD(P)-dependent oxidoreductase [Rubricoccaceae bacterium] diamond 756 110 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
30351716 30351716 PRJNA1041773_P_NODE_44232_length_320_cov_0.935223_g43899_i0 PRJNA1041773 44232 320 0.935223 2.9927136 Salinibacter ruber 146919 Bacteria Bacteria 95.9 1.73e-21   NR WP_259077748.1 146919 g43899 i0 43.9 1.003125 107 59 99.4 1 2 319 94 200 WP_259077748.1 hypothetical protein [Salinibacter ruber] diamond 321 95.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;