RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1041773", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1041773 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12924327 12924327 PRJNA1041773_P_NODE_66331_length_268_cov_1.912821_g65998_i0 PRJNA1041773 66331 268 1.912821 5.12636028 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 54.7 0.007   NTclustered gi|2119417935|ref|XM_044688399.1| 51637 g65998 i0 96.97 0.123134328358209 33 0 12 1 46 77 2955 2923 Naegleria lovaniensis uncharacterized protein (C9374_012613), partial mRNA blastn 33 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
12924589 12924589 PRJNA1041773_P_NODE_81951_length_249_cov_0.875000_g81618_i0 PRJNA1041773 81951 249 0.875 2.17875 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 93.5 1.33e-14   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g81618 i0 98.113 0.21285140562249 53 1 21 0 1 53 3929 3981 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 53 93.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;