RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1040136" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1040136 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23122024 23122024 PRJNA1040136_S_NODE_2519_length_245_cov_2.151163_g2516_i0 PRJNA1040136 2519 245 2.151163 5.27034935 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 99.4 1.8399999999999998e-23   NR KRX08932.1 266149 g2516 i0 76.9 0.636734693877551 52 12 63.7 0 3 158 190 241 KRX08932.1 Ribosomal protein L30, ferredoxin-like fold domain [Pseudocohnilembus persalinus] diamond 156 99.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
27161336 27161336 PRJNA1040136_S_NODE_1942_length_265_cov_1.203125_g1939_i0 PRJNA1040136 1942 265 1.203125 3.18828125 Paramecium sonneborni 65129 SAR_Eukaryotes SAR_Eukaryotes 61.6 1.4e-9   NR CAD8050189.1 65129 g1939 i0 81.8 0.373584905660377 33 6 37.4 0 265 167 114 146 CAD8050189.1 unnamed protein product [Paramecium sonneborni] diamond 99 61.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
28014545 28014545 PRJNA1040136_S_NODE_2645_length_243_cov_0.905882_g2642_i0 PRJNA1040136 2645 243 0.905882 2.20129326 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 62.4 2.36e-9   NR XP_976672.2 312017 g2642 i0 59.6 0.580246913580247 47 19 58 0 242 102 204 250 XP_976672.2 proteasome subunit beta type protein [Tetrahymena thermophila SB210] diamond 141 62.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30098279 30098279 PRJNA1040136_S_NODE_2152_length_256_cov_1.262295_g2149_i0 PRJNA1040136 2152 256 1.262295 3.2314752 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 79.3 1.74e-16   NR KRX07275.1 266149 g2149 i0 54.9 0.83203125 71 32 83.2 0 256 44 80 150 KRX07275.1 hypothetical protein PPERSA_06890 [Pseudocohnilembus persalinus] diamond 213 79.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31489136 31489136 PRJNA1040136_S_NODE_356_length_442_cov_2.330623_g353_i0 PRJNA1040136 356 442 2.330623 10.30135366 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 92.4 1.54e-18   NR KRX05732.1 266149 g353 i0 52.8 1.22850678733032 89 40 60.4 2 428 162 1778 1864 KRX05732.1 Translation protein SH3-like domain [Pseudocohnilembus persalinus] diamond 543 92.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
32658720 32658720 PRJNA1040136_S_NODE_2040_length_261_cov_1.010638_g2037_i0 PRJNA1040136 2040 261 1.010638 2.63776518 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.42e-6   NR XP_001024780.1 312017 g2037 i0 54.5 0.505747126436782 44 20 50.6 0 259 128 308 351 XP_001024780.1 cytoplasmic and cytosolic malate dehydrogenase family protein [Tetrahymena thermophila SB210] diamond 132 55.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;