RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1040136" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1040136 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10372971 10372971 PRJNA1040136_S_NODE_129_length_577_cov_3.019841_g126_i0 PRJNA1040136 129 577 3.019841 17.42448257 Natroniella sp. ANB-PHB2 3384444 Bacteria Bacteria 54.7 0.016   NTclustered gi|2869714905|gb|CP175562.1| 3384444 g126 i0 100 0.0502599653379549 29 0 5 0 355 383 1966746 1966718 Natroniella sp. ANB-PHB2 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Clostridia Halanaerobiales Halobacteroidaceae Natroniella Natroniella sp. ANB-PHB2
18021607 18021607 PRJNA1040136_S_NODE_415_length_425_cov_8.258523_g412_i0 PRJNA1040136 415 425 8.258523 35.09872275 Priestia megaterium 1404 Bacteria Bacteria 52.8 0.041   NTclustered gi|1935015176|gb|CP064793.1| 1404 g412 i0 100 0.0658823529411765 28 0 7 0 331 358 3980692 3980665 Priestia megaterium strain IGA-FME-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Priestia Priestia megaterium
24395797 24395797 PRJNA1040136_S_NODE_1820_length_269_cov_4.336735_g1817_i0 PRJNA1040136 1820 269 4.336735 11.66581715 Latilactobacillus sakei 1599 Bacteria Bacteria 52.8 0.025   NTclustered gi|2254134276|gb|CP015487.1| 1599 g1817 i0 94.118 0.12639405204461 34 2 13 0 92 125 1607396 1607429 Latilactobacillus sakei strain TMW 1.46 chromosome, complete genome blastn 34 52.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei
27003376 27003376 PRJNA1040136_S_NODE_2862_length_232_cov_2.276730_g2859_i0 PRJNA1040136 2862 232 2.27673 5.2820136 Streptococcus anginosus 1328 Bacteria Bacteria 79 1.35e-15   NR WP_336374935.1 1328 g2859 i0 96 0.646551724137931 50 2 64.7 0 160 11 1 50 WP_336374935.1 hypothetical protein, partial [Streptococcus anginosus] diamond 150 79 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus
29971979 29971979 PRJNA1040136_S_NODE_1351_length_295_cov_1.436937_g1348_i0 PRJNA1040136 1351 295 1.436937 4.23896415 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 82 3.12e-17   NR MDD3412370.1 1898203 g1348 i0 43.8 0.905084745762712 89 49 89.5 1 7 270 70 158 MDD3412370.1 hypothetical protein [Lachnospiraceae bacterium] diamond 267 82 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
32311741 32311741 PRJNA1040136_S_NODE_139_length_565_cov_2.447154_g136_i0 PRJNA1040136 139 565 2.447154 13.8264201 Staphylococcus pseudintermedius 283734 Bacteria Bacteria 110 9.68e-28   NR WP_222114562.1 283734 g136 i0 100 1.6141592920354 76 0 40.4 0 228 1 1 76 WP_222114562.1 hypothetical protein, partial [Staphylococcus pseudintermedius] diamond 912 110 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;