RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1040136", tax_kingdom = "Metazoa" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1040136 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15472564 15472564 PRJNA1040136_S_NODE_1713_length_274_cov_1.666667_g1710_i0 PRJNA1040136 1713 274 1.666667 4.56666758 Mytilus californianus 6549 Mollusca Mollusca 56.5 0.002   NTclustered gi|2334608986|ref|XM_052206883.1| 6549 g1710 i0 94.444 0.131386861313869 36 2 13 0 166 201 2610 2645 PREDICTED: Mytilus californianus RING finger protein 11-like (LOC127702581), mRNA blastn 36 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
29616300 29616300 PRJNA1040136_S_NODE_1690_length_275_cov_2.113861_g1687_i0 PRJNA1040136 1690 275 2.113861 5.81311775 root 1 Root_unresolved Root_unresolved 52 2.66e-5   NR CAG2187267.1 6550 g1687 i0 42.4 10.0363636363636 59 34 64.4 0 271 95 218 276 CAG2187267.1 unnamed protein product [Mytilus edulis] diamond 2760 52 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;