RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1040136" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1040136 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7822346 7822346 PRJNA1040136_S_NODE_147_length_559_cov_2.481481_g144_i0 PRJNA1040136 147 559 2.481481 13.87147879 Planctomycetota bacterium 2026780 Bacteria Bacteria 54.7 0.015   NTclustered gi|2621706020|emb|OY764082.1| 2026780 g144 i0 96.875 0.21824686940966 32 1 6 0 25 56 522043 522074 MAG: Planctomycetota bacterium isolate b62d8c61-b663-4402-817f-8d709632624f genome assembly, chromosome: 1 blastn 122 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28038025 28038025 PRJNA1040136_S_NODE_1945_length_264_cov_5.031414_g1942_i0 PRJNA1040136 1945 264 5.031414 13.28293296 Bacteria 2 Bacteria Bacteria 46.2 0.00285   NR MEM8946921.1 2026780 g1942 i0 37 1.18181818181818 46 29 52.3 0 61 198 240 285 MEM8946921.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase [Planctomycetota bacterium] diamond 312 46.6 0.991416309012876 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;