RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1040136", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1040136 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19295579 19295579 PRJNA1040136_S_NODE_1596_length_280_cov_1.115942_g1593_i0 PRJNA1040136 1596 280 1.115942 3.1246376 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 138 3.03e-40   NR XP_004336922.1 1257118 g1593 i0 88.5 1.68214285714286 78 9 83.6 0 279 46 28 105 XP_004336922.1 ribosomal protein L44, putative [Acanthamoeba castellanii str. Neff] diamond 471 138 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28393240 28393240 PRJNA1040136_S_NODE_1726_length_274_cov_0.960199_g1723_i0 PRJNA1040136 1726 274 0.960199 2.63094526 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 3.41e-29   NR XP_004339529.1 1257118 g1723 i0 78.6 1.85036496350365 56 12 61.3 0 5 172 85 140 XP_004339529.1 Ctype lysozyme/alpha-lactalbumin superfamily protein [Acanthamoeba castellanii str. Neff] diamond 507 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;