RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA1036688" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1036688 · 12 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169643 169643 PRJNA1036688_P_NODE_3401_length_352_cov_2.749206_g3110_i0 PRJNA1036688 3401 352 2.749206 9.67720512 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 529 1.2599999999999996e-145   NTclustered gi|2874253793|emb|OY969777.1| 412056 g3110 i0 93.768 148.196022727273 353 21 100 1 1 352 2365853 2365501 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 blastn 52165 529 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
2720108 2720108 PRJNA1036688_P_NODE_7363_length_206_cov_2.686391_g7071_i0 PRJNA1036688 7363 206 2.686391 5.53396546 Chthoniobacter flavus 191863 Bacteria Bacteria 302 1.62e-77   NTclustered gi|183579828|emb|AM905425.1| 497964 g7071 i0 97.207 242.393203883495 179 4 87 1 28 206 2188 2365 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 49933 302 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
9936207 9936207 PRJNA1036688_P_NODE_8728_length_185_cov_1.527027_g8436_i0 PRJNA1036688 8728 185 1.527027 2.82499995 Opitutus 178440 Bacteria Bacteria 315 1.8199999999999998e-81   NTclustered gi|470483113|ref|NR_076574.1| 107709 g8436 i0 97.297 165.281081081081 185 5 100 0 1 185 1598 1782 Opitutus terrae strain PB90-1 23S ribosomal RNA gene, complete sequence blastn 30577 315 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
11648185 11648185 PRJNA1036688_P_NODE_5430_length_258_cov_1.760181_g5138_i0 PRJNA1036688 5430 258 1.760181 4.54126698 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 427 3.34e-115   NTclustered gi|2874253793|emb|OY969777.1| 412056 g5138 i0 96.525 115.015503875969 259 8 100 1 1 258 2363758 2364016 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 blastn 29674 427 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
12923357 12923357 PRJNA1036688_P_NODE_2551_length_428_cov_1.964194_g2261_i0 PRJNA1036688 2551 428 1.964194 8.40675032 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 632 1.1599999999999998e-176   NTclustered gi|2874253793|emb|OY969777.1| 412056 g2261 i0 93.853 160.679906542056 423 20 98 6 9 428 2364637 2365056 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 blastn 68771 632 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
12923400 12923400 PRJNA1036688_P_NODE_7971_length_196_cov_1.735849_g7679_i0 PRJNA1036688 7971 196 1.735849 3.40226404 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 285 1.54e-72   NTclustered gi|2874253974|emb|OY970299.1| 412056 g7679 i0 92.857 148.923469387755 196 14 100 0 1 196 1258288 1258093 MAG: uncultured Verrucomicrobiae bacterium isolate MFD09603.bin.1.43 genome assembly, chromosome: 1 blastn 29189 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15472472 15472472 PRJNA1036688_P_NODE_11793_length_154_cov_1.290598_g11501_i0 PRJNA1036688 11793 154 1.290598 1.98752092 Pedosphaera parvula 1032527 Bacteria Bacteria 285 1.14e-72   NTclustered gi|183579829|emb|AM905426.1| 320771 g11501 i0 100 5.87012987012987 154 0 100 0 1 154 2704 2857 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 904 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
18021492 18021492 PRJNA1036688_P_NODE_10055_length_169_cov_2.121212_g9763_i0 PRJNA1036688 10055 169 2.121212 3.58484828 Pedosphaera parvula 1032527 Bacteria Bacteria 279 5.95e-71   NTclustered gi|183579829|emb|AM905426.1| 320771 g9763 i0 96.45 8.07100591715976 169 6 100 0 1 169 421 253 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 1364 279 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
18859691 18859691 PRJNA1036688_P_NODE_11055_length_160_cov_1.268293_g10763_i0 PRJNA1036688 11055 160 1.268293 2.0292688 Verrucomicrobiales 48461 Bacteria Bacteria 281 1.55e-71   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g10763 i0 98.148 270.3875 162 1 100 2 1 160 3413305 3413144 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 43262 281 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
19295457 19295457 PRJNA1036688_P_NODE_12056_length_152_cov_1.008696_g11764_i0 PRJNA1036688 12056 152 1.008696 1.53321792 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 183 4.22e-42   NTclustered gi|1085974270|emb|LT629781.1| 1882831 g11764 i0 91.241 1.88157894736842 137 9 89 3 18 152 3537351 3537486 Verrucomicrobiaceae bacterium GAS474 genome assembly, chromosome: I blastn 286 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
19295468 19295468 PRJNA1036688_P_NODE_2496_length_435_cov_2.183417_g2207_i0 PRJNA1036688 2496 435 2.183417 9.49786395 Pedosphaera parvula 1032527 Bacteria Bacteria 787 0   NTclustered gi|183579829|emb|AM905426.1| 320771 g2207 i0 99.31 79.7218390804598 435 3 100 0 1 435 1316 882 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 34679 787 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
24395765 24395765 PRJNA1036688_P_NODE_9780_length_172_cov_1.888889_g9488_i0 PRJNA1036688 9780 172 1.888889 3.24888908 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 272 1.02e-68   NTclustered gi|2874253974|emb|OY970299.1| 412056 g9488 i0 95.322 91.0523255813954 171 8 99 0 2 172 1258248 1258418 MAG: uncultured Verrucomicrobiae bacterium isolate MFD09603.bin.1.43 genome assembly, chromosome: 1 blastn 15661 272 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;