RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1036688" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1036688 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5272510 5272510 PRJNA1036688_P_NODE_5445_length_257_cov_4.890909_g5153_i0 PRJNA1036688 5445 257 4.890909 12.56963613 Treponema bryantii 163 Bacteria Bacteria 298 2.72e-76   NTclustered gi|2581915939|dbj|AP025286.1| 163 g5153 i0 87.692 164.498054474708 260 27 99 4 2 257 1346518 1346776 Treponema bryantii JCM 32280 DNA, complete genome blastn 42276 298 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii
6111254 6111254 PRJNA1036688_P_NODE_5225_length_265_cov_1.771930_g4933_i0 PRJNA1036688 5225 265 1.77193 4.6956145 Spirochaetales 136 Bacteria Bacteria 206 1.76e-48   NTclustered gi|2093987262|gb|CP067089.2| 2798577 g4933 i0 80.827 100.147169811321 266 47 99 4 2 265 9424 9687 Breznakiella homolactica strain RmG30 chromosome, complete genome blastn 26539 207 0.995169082125604 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Breznakiella Breznakiella homolactica
6111265 6111265 PRJNA1036688_P_NODE_7785_length_199_cov_0.969136_g7493_i0 PRJNA1036688 7785 199 0.969136 1.92858064 Treponema 157 Bacteria Bacteria 355 1.18e-93   NTclustered gi|1807378492|gb|CP048020.1| 69710 g7493 i0 98.995 182.120603015075 199 1 100 1 1 199 2079570 2079373 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 36242 355 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
6547689 6547689 PRJNA1036688_P_NODE_11886_length_153_cov_1.336207_g11594_i0 PRJNA1036688 11886 153 1.336207 2.04439671 Treponema bryantii 163 Bacteria Bacteria 185 1.18e-42   NTclustered gi|2581915939|dbj|AP025286.1| 163 g11594 i0 89.189 10.5032679738562 148 16 99 0 1 148 704391 704538 Treponema bryantii JCM 32280 DNA, complete genome blastn 1607 185 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;