RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1036688" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3996183 3996183 PRJNA1036688_P_NODE_8024_length_195_cov_2.348101_g7732_i0 PRJNA1036688 8024 195 2.348101 4.57879695 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 361 2.46e-95   NTclustered gi|67090779|gb|DQ007471.1| 65357 g7732 i0 100 40.174358974359 195 0 100 0 1 195 417 611 Albugo candida isolate F20 large subunit ribosomal RNA gene, partial sequence blastn 7834 361 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
5272480 5272480 PRJNA1036688_P_NODE_11845_length_153_cov_2.344828_g11553_i0 PRJNA1036688 11845 153 2.344828 3.58758684 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 283 4.0799999999999995e-72   NTclustered gi|338797988|gb|HQ665049.1| 65357 g11553 i0 100 99.4901960784314 153 0 100 0 1 153 1388 1236 Albugo candida isolate AC2V 28S large subunit ribosomal RNA gene, partial sequence blastn 15222 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
18021538 18021538 PRJNA1036688_P_NODE_5315_length_262_cov_2.640000_g5023_i0 PRJNA1036688 5315 262 2.64 6.9168 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 484 1.99e-132   NTclustered gi|325194423|emb|FR825253.1| 890382 g5023 i0 100 101.465648854962 262 0 100 0 1 262 450 711 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 26584 484 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21846639 21846639 PRJNA1036688_P_NODE_9638_length_174_cov_1.386861_g9346_i0 PRJNA1036688 9638 174 1.386861 2.41313814 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 316 4.7e-82   NTclustered gi|325194423|emb|FR825253.1| 890382 g9346 i0 99.425 100 174 1 100 0 1 174 699 872 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 17400 316 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
30375192 30375192 PRJNA1036688_P_NODE_2612_length_421_cov_1.901042_g2322_i0 PRJNA1036688 2612 421 1.901042 8.00338682 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 138 8.75e-35   NR TMW56563.1 41045 g2322 i0 80.5 2.47980997624703 87 17 62 0 41 301 567 653 TMW56563.1 hypothetical protein Poli38472_006573 [Pythium oligandrum] diamond 1044 139 0.992805755395683 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30856636 30856636 PRJNA1036688_P_NODE_10194_length_168_cov_1.183206_g9902_i0 PRJNA1036688 10194 168 1.183206 1.98778608 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 79 1.6e-15   NR XP_024575780.1 4781 g9902 i0 72.7 0.982142857142857 55 15 98.2 0 166 2 264 318 XP_024575780.1 methylthioribose-1-phosphate isomerase [Plasmopara halstedii] diamond 165 79 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;