RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1036688" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1036688 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7822292 7822292 PRJNA1036688_P_NODE_6207_length_234_cov_2.532995_g5915_i0 PRJNA1036688 6207 234 2.532995 5.9272083 Mucor mucedo 29922 Fungi Fungi 193 1.18e-44   NTclustered gi|2324050007|ref|XM_051601342.1| 29922 g5915 i0 84.817 32.6623931623932 191 29 82 0 29 219 302 112 Mucor mucedo S-adenosylmethionine synthase (EV154DRAFT_506880), mRNA blastn 7643 193 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor mucedo
12486993 12486993 PRJNA1036688_P_NODE_9390_length_176_cov_3.431655_g9098_i0 PRJNA1036688 9390 176 3.431655 6.0397128 Fungi 4751 Fungi Fungi 219 1.3799999999999999e-52   NTclustered gi|2323713879|ref|XM_051576023.1| 101096 g9098 i0 90.361 83.1306818181818 166 16 94 0 1 166 245 80 Gilbertella persicaria translation elongation factor EF-1 alpha (B0P05DRAFT_522875), mRNA blastn 14631 219 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Choanephoraceae Gilbertella Gilbertella persicaria
16746637 16746637 PRJNA1036688_P_NODE_4494_length_294_cov_2.898833_g4202_i0 PRJNA1036688 4494 294 2.898833 8.52256902 Halteromyces radiatus 101107 Fungi Fungi 161 4.339999999999999e-35   NTclustered gi|2323714695|ref|XM_051541296.1| 101107 g4202 i0 89.147 9.40476190476191 129 14 44 0 61 189 241 113 Halteromyces radiatus zinc-binding ribosomal protein (BX664DRAFT_275648), mRNA blastn 2765 161 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Cunninghamellaceae Halteromyces Halteromyces radiatus
18021568 18021568 PRJNA1036688_P_NODE_8875_length_183_cov_1.582192_g8583_i0 PRJNA1036688 8875 183 1.582192 2.89541136 Lichtheimia ornata 688661 Fungi Fungi 183 5.3e-42   NTclustered gi|2553572631|ref|XM_058485264.1| 688661 g8583 i0 84.783 10.2950819672131 184 26 100 2 1 183 991 809 Lichtheimia ornata isocitrate dehydrogenase [NADP], mitochondrial (O0I10_005217), partial mRNA blastn 1884 183 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata
23121896 23121896 PRJNA1036688_P_NODE_10139_length_168_cov_3.320611_g9847_i0 PRJNA1036688 10139 168 3.320611 5.57862648 Lichtheimia ornata 688661 Fungi Fungi 143 8.139999999999998e-30   NTclustered gi|2553551579|ref|XM_058480883.1| 688661 g9847 i0 84.615 73.5357142857143 143 22 85 0 6 148 1105 1247 Lichtheimia ornata elongation factor 2 (O0I10_000778), partial mRNA blastn 12354 143 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata
30446116 30446116 PRJNA1036688_P_NODE_8913_length_182_cov_2.731034_g8621_i0 PRJNA1036688 8913 182 2.731034 4.97048188 Actinomortierella wolfii 90253 Fungi Fungi 67.8 4.48e-12   NR KAG0238351.1 90253 g8621 i0 62.3 1.99450549450549 61 20 98.9 2 3 182 111 169 KAG0238351.1 hypothetical protein BGW42_005584 [Actinomortierella wolfii] diamond 363 67.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Mortierellomycetes Mortierellales Mortierellaceae Actinomortierella Actinomortierella wolfii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;