RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1036688" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1036688 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9936178 9936178 PRJNA1036688_P_NODE_11348_length_157_cov_1.933333_g11056_i0 PRJNA1036688 11348 157 1.933333 3.03533281 Chloroflexus 1107 Bacteria Bacteria 224 2.5899999999999994e-54   NTclustered gi|470482818|ref|NR_076553.1| 1108 g11056 i0 92.453 9.11464968152866 159 9 100 2 1 157 1742 1899 Chloroflexus aurantiacus strain J-10-fl 23S ribosomal RNA gene, complete sequence blastn 1431 224 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus
19295499 19295499 PRJNA1036688_P_NODE_6496_length_226_cov_2.190476_g6204_i0 PRJNA1036688 6496 226 2.190476 4.95047576 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 407 3.73e-109   NTclustered gi|2874253981|emb|OY970306.1| 1672391 g6204 i0 99.552 188.269911504425 223 1 99 0 1 223 1028171 1027949 MAG: uncultured Chloroflexia bacterium isolate MFD02134.bin.c.1 genome assembly, chromosome: 1 blastn 42549 407 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
21846572 21846572 PRJNA1036688_P_NODE_11718_length_154_cov_2.632479_g11426_i0 PRJNA1036688 11718 154 2.632479 4.05401766 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 246 5.4e-61   NTclustered gi|2874253835|emb|OY969885.1| 1672391 g11426 i0 95.455 7.24025974025974 154 7 100 0 1 154 2092933 2092780 MAG: uncultured Chloroflexia bacterium isolate MFD01275.bin.c.5 genome assembly, chromosome: 1 blastn 1115 246 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
27982798 27982798 PRJNA1036688_P_NODE_8485_length_188_cov_2.013245_g8193_i0 PRJNA1036688 8485 188 2.013245 3.7849006 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 114 1.23e-30   NR MDO9333994.1 2026733 g8193 i0 91.9 1.97872340425532 62 5 98.9 0 3 188 29 90 MDO9333994.1 30S ribosomal protein S4 [Dehalococcoidales bacterium] diamond 372 114 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;