RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1036688", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1036688 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15472534 15472534 PRJNA1036688_P_NODE_9933_length_170_cov_3.706767_g9641_i0 PRJNA1036688 9933 170 3.706767 6.3015039 uncultured Arcobacter sp. 165434 Bacteria Bacteria 122 1.0699999999999997e-23   NTclustered gi|682122801|gb|KJ739652.1| 165434 g9641 i0 88.462 81.7882352941176 104 8 60 4 1 102 107 6 Uncultured Arcobacter sp. clone ONWR3-May-27-2012 23S ribosomal RNA gene, partial sequence blastn 13904 122 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.
18021573 18021573 PRJNA1036688_P_NODE_9795_length_172_cov_1.444444_g9503_i0 PRJNA1036688 9795 172 1.444444 2.48444368 uncultured Arcobacter sp. 165434 Bacteria Bacteria 267 4.73e-67   NTclustered gi|682122801|gb|KJ739652.1| 165434 g9503 i0 94.767 144.96511627907 172 8 99 1 1 171 105 276 Uncultured Arcobacter sp. clone ONWR3-May-27-2012 23S ribosomal RNA gene, partial sequence blastn 24934 267 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.
25234290 25234290 PRJNA1036688_P_NODE_10200_length_168_cov_1.175573_g9908_i0 PRJNA1036688 10200 168 1.175573 1.97496264 Campylobacter 194 Bacteria Bacteria 287 3.55e-73   NTclustered gi|1483583505|emb|LT631429.1| 204 g9908 i0 97.619 217.220238095238 168 3 100 1 1 168 30911 31077 Campylobacter showae genome assembly, plasmid: V blastn 36493 287 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;