RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1036688", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1036688 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4836159 4836159 PRJNA1036688_P_NODE_8924_length_182_cov_2.172414_g8632_i0 PRJNA1036688 8924 182 2.172414 3.95379348 Bdellovibrio 958 Bacteria Bacteria 337 3.82e-88   NTclustered gi|2800917394|gb|CP168972.1| 959 g8632 i0 100 219.368131868132 182 0 100 0 1 182 748219 748400 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 39925 337 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
17585912 17585912 PRJNA1036688_P_NODE_3634_length_339_cov_2.433775_g3343_i0 PRJNA1036688 3634 339 2.433775 8.25049725 Micavibrio 213485 Bacteria Bacteria 324 6.14e-84   NTclustered gi|469926873|gb|CP003538.1| 349215 g3343 i0 84.164 204.120943952802 341 47 99 7 2 339 463108 462772 Micavibrio aeruginosavorus EPB, complete genome blastn 69197 324 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;