RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1036688", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2720056 2720056 PRJNA1036688_P_NODE_10803_length_162_cov_1.824000_g10511_i0 PRJNA1036688 10803 162 1.824 2.95488 Opisthokonta 33154 Echinodermata other_Eukaryota 81.6 8.48e-17   NR XP_041481762.1 7654 g10511 i0 72.2 10.962962962963 54 15 100 0 162 1 196 249 XP_041481762.1 60S ribosomal protein L5-like [Lytechinus variegatus] diamond 1776 82.4 0.990291262135922 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
9097275 9097275 PRJNA1036688_P_NODE_7188_length_210_cov_2.069364_g6896_i0 PRJNA1036688 7188 210 2.069364 4.3456644 Patiria miniata 46514 Echinodermata other_Eukaryota 132 2.28e-36   NR XP_038051326.1 46514 g6896 i0 85.3 0.971428571428571 68 10 97.1 0 205 2 176 243 XP_038051326.1 60S ribosomal protein L7-like [Patiria miniata] diamond 204 132 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;