RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1036688" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA1036688 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6111231 6111231 PRJNA1036688_P_NODE_10985_length_160_cov_5.024390_g10693_i0 PRJNA1036688 10985 160 5.02439 8.039024 Fusobacterium 848 Bacteria Bacteria 296 5.55e-76   NTclustered gi|2706496642|gb|CP084152.1| 76857 g10693 i0 100 490.9375 160 0 100 0 1 160 626558 626399 Fusobacterium polymorphum strain KCOM2594 chromosome, complete genome blastn 78550 296 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
6547709 6547709 PRJNA1036688_P_NODE_5566_length_253_cov_1.449074_g5274_i0 PRJNA1036688 5566 253 1.449074 3.66615722 Fusobacterium animalis 76859 Bacteria Bacteria 468 1.92e-127   NTclustered gi|2706060613|gb|CP077190.1| 76859 g5274 i0 100 487.00395256917 253 0 100 0 1 253 1859173 1859425 Fusobacterium animalis strain SB026 chromosome, complete genome blastn 123212 468 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
6547730 6547730 PRJNA1036688_P_NODE_8286_length_191_cov_1.915584_g7994_i0 PRJNA1036688 8286 191 1.915584 3.65876544 Cetobacterium somerae 188913 Bacteria Bacteria 348 1.87e-91   NTclustered gi|2850954511|gb|CP173065.1| 1319815 g7994 i0 99.476 498.575916230366 191 1 100 0 1 191 941312 941122 Cetobacterium somerae ATCC BAA-474 chromosome blastn 95228 348 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
8661262 8661262 PRJNA1036688_P_NODE_7187_length_210_cov_2.086705_g6895_i0 PRJNA1036688 7187 210 2.086705 4.3820805 Leptotrichia 32067 Bacteria Bacteria 383 5.75e-102   NTclustered gi|631253196|ref|NR_114394.1| 40542 g6895 i0 99.524 108 210 1 100 0 1 210 751 542 Leptotrichia buccalis strain C-1013-b 16S ribosomal RNA, partial sequence blastn 22680 383 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
9097253 9097253 PRJNA1036688_P_NODE_5168_length_267_cov_2.108696_g4876_i0 PRJNA1036688 5168 267 2.108696 5.63021832 Leptotrichia wadei 157687 Bacteria Bacteria 429 9.659999999999999e-116   NTclustered gi|1708577445|dbj|AP019835.1| 157687 g4876 i0 100 402.805243445693 232 0 87 0 36 267 233341 233572 Leptotrichia wadei JMUB3934 DNA, complete genome blastn 107549 429 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
10372922 10372922 PRJNA1036688_P_NODE_7969_length_196_cov_1.792453_g7677_i0 PRJNA1036688 7969 196 1.792453 3.51320788 Leptotrichia wadei 157687 Bacteria Bacteria 357 3.2099999999999996e-94   NTclustered gi|1791353085|dbj|AP019829.2| 157687 g7677 i0 99.49 177.647959183673 196 1 100 0 1 196 214198 214003 Leptotrichia wadei JCM16777 DNA, complete genome blastn 34819 357 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
17585929 17585929 PRJNA1036688_P_NODE_8214_length_192_cov_1.929032_g7922_i0 PRJNA1036688 8214 192 1.929032 3.70374144 Fusobacterium 848 Bacteria Bacteria 350 5.24e-92   NTclustered gi|2446175567|gb|CP117964.1| 851 g7922 i0 99.479 457.890625 192 1 100 0 1 192 997063 997254 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 87915 350 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;