RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1036688", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2283328 2283328 PRJNA1036688_P_NODE_4402_length_298_cov_2.938697_g4110_i0 PRJNA1036688 4402 298 2.938697 8.75731706 Colpodida 88566 SAR_Eukaryotes SAR_Eukaryotes 542 1.35e-149   NTclustered gi|156499055|gb|EU039885.1| 459237 g4110 i0 99.333 100.395973154362 300 0 100 2 1 298 51 350 Bresslauides discoideus 18S ribosomal RNA gene, partial sequence; macronuclear blastn 29918 542 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Hausmanniellidae Bresslauides Bresslauides discoideus
7822312 7822312 PRJNA1036688_P_NODE_8967_length_182_cov_1.048276_g8675_i0 PRJNA1036688 8967 182 1.048276 1.90786232 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 287 3.9e-73   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g8675 i0 95.055 3.53846153846154 182 9 100 0 1 182 2007 2188 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 644 287 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
10372931 10372931 PRJNA1036688_P_NODE_8629_length_186_cov_2.322148_g8337_i0 PRJNA1036688 8629 186 2.322148 4.31919528 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 292 8.61e-75   NTclustered gi|2651357788|gb|PP174303.1| 41631 g8337 i0 95.161 45.8225806451613 186 7 100 2 1 186 3368 3551 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8523 292 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
11648193 11648193 PRJNA1036688_P_NODE_6530_length_225_cov_1.909574_g6238_i0 PRJNA1036688 6530 225 1.909574 4.2965415 Lamtostyla gui 2678605 SAR_Eukaryotes SAR_Eukaryotes 327 2.97e-85   NTclustered gi|1778223994|gb|MN733822.1| 2678605 g6238 i0 92.889 100.133333333333 225 16 100 0 1 225 4923 4699 Lamtostyla gui isolate LWY2015111409 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22530 327 1 Eukaryota Sar   Ciliophora Spirotrichea Stichotrichida Amphisiellidae Lamtostyla Lamtostyla gui
16746614 16746614 PRJNA1036688_P_NODE_12294_length_150_cov_1.362832_g12002_i0 PRJNA1036688 12294 150 1.362832 2.044248 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 128 1.97e-25   NTclustered gi|47176397|gb|AY617977.1| 94289 g12002 i0 87.5 6.81333333333333 112 12 74 2 32 142 455 345 Sterkiella histriomuscorum clone UGC1O0006_M16_R genomic sequence blastn 1022 128 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
20570867 20570867 PRJNA1036688_P_NODE_9137_length_179_cov_3.352113_g8845_i0 PRJNA1036688 9137 179 3.352113 6.00028227 Parabistichella variabilis 1071703 SAR_Eukaryotes SAR_Eukaryotes 324 2.91e-84   NTclustered gi|751363249|gb|KP266659.1| 1071703 g8845 i0 99.438 99.195530726257 178 1 99 0 1 178 1528 1705 Parabistichella variabilis isolate B102 28S ribosomal RNA gene, partial sequence blastn 17756 324 1 Eukaryota Sar   Ciliophora Spirotrichea     Parabistichella Parabistichella variabilis
32501520 32501520 PRJNA1036688_P_NODE_8099_length_194_cov_2.210191_g7807_i0 PRJNA1036688 8099 194 2.210191 4.28777054 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 52 5.61e-6   NR KRX05597.1 266149 g7807 i0 60.9 1.31443298969072 46 16 68 1 61 192 49 94 KRX05597.1 Ribosomal protein L6, alpha-beta domain [Pseudocohnilembus persalinus] diamond 255 52 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;