RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1036688", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1444339 1444339 PRJNA1036688_P_NODE_6242_length_233_cov_2.219388_g5950_i0 PRJNA1036688 6242 233 2.219388 5.17117404 Cercomonas agilis 310805 SAR_Eukaryotes SAR_Eukaryotes 254 5.33e-63   NTclustered gi|58414956|gb|AY748813.1| 310805 g5950 i0 86.266 161.583690987124 233 32 100 0 1 233 3 235 Cercomonas agilis polyubiquitin (UBQ) gene, partial cds blastn 37649 254 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas agilis
12923372 12923372 PRJNA1036688_P_NODE_451_length_1082_cov_2.927273_g289_i0 PRJNA1036688 451 1082 2.927273 31.67309386 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 542 3.22e-190   NR MES1909605.1 1215613 g289 i0 74.2 4.88817005545287 349 90 96.8 0 1082 36 85 433 MES1909605.1 hypothetical protein [Cercozoa sp. M6MM] diamond 5289 542 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
14198254 14198254 PRJNA1036688_P_NODE_4232_length_305_cov_2.104478_g3940_i0 PRJNA1036688 4232 305 2.104478 6.4186579 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 267 9.33e-67   NTclustered gi|2651357794|gb|PP174308.1| 1979794 g3940 i0 82.736 87.8852459016394 307 45 100 7 1 305 3587 3887 Cercomonas sp. isolate JGP5 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26805 267 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.
15472506 15472506 PRJNA1036688_P_NODE_6953_length_215_cov_2.196629_g6661_i0 PRJNA1036688 6953 215 2.196629 4.72275235 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 392 9.83e-105   NTclustered gi|238617602|gb|FJ973377.1| 188950 g6661 i0 99.537 67.5116279069767 216 0 100 1 1 215 2888 2673 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 14515 392 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;