RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1036688", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169673 169673 PRJNA1036688_P_NODE_8021_length_195_cov_2.443038_g7729_i0 PRJNA1036688 8021 195 2.443038 4.7639241 Sarcocystis asinus 2925352 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.65e-8   NTclustered gi|2206936643|gb|OM971684.1| 2925352 g7729 i0 84.507 3.92820512820513 71 11 36 0 53 123 1686 1616 Sarcocystis asinus isolate YDDSa2 large subunit ribosomal RNA gene, partial sequence blastn 766 71.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis asinus
5272499 5272499 PRJNA1036688_P_NODE_3645_length_338_cov_4.382060_g3354_i0 PRJNA1036688 3645 338 4.38206 14.8113628 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.91e-4   NTclustered gi|1931714359|ref|XR_552297.2| 54757 g3354 i0 86.792 2.5207100591716 53 7 16 0 171 223 4102 4050 Plasmodium vinckei vinckei ribosomal RNA (PVVCY_0502190), rRNA blastn 852 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
6547678 6547678 PRJNA1036688_P_NODE_10966_length_161_cov_1.072581_g10674_i0 PRJNA1036688 10966 161 1.072581 1.72685541 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 248 1.59e-61   NTclustered gi|820695469|tpe|LN714488.1| 572307 g10674 i0 94.41 1 161 9 100 0 1 161 80247 80407 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 161 248 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
26940121 26940121 PRJNA1036688_P_NODE_8342_length_190_cov_2.477124_g8050_i0 PRJNA1036688 8342 190 2.477124 4.7065356 Hepatocystis sp. ex Piliocolobus tephrosceles 2600580 SAR_Eukaryotes SAR_Eukaryotes 99 3.68e-25   NR VWU51230.1 2600580 g8050 i0 79 0.978947368421053 62 13 97.9 0 188 3 16 77 VWU51230.1 60S ribosomal protein L44 [Hepatocystis sp. ex Piliocolobus tephrosceles] diamond 186 99 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Hepatocystis Hepatocystis sp. ex Piliocolobus tephrosceles
31670607 31670607 PRJNA1036688_P_NODE_7197_length_210_cov_1.549133_g6905_i0 PRJNA1036688 7197 210 1.549133 3.2531793 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 103 1.11e-25   NR OEH76901.1 88456 g6905 i0 75.4 12.6571428571429 69 17 98.6 0 4 210 103 171 OEH76901.1 ribosomal protein rpl19 [Cyclospora cayetanensis] diamond 2658 103 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
31765478 31765478 PRJNA1036688_P_NODE_6417_length_228_cov_1.921466_g6125_i0 PRJNA1036688 6417 228 1.921466 4.38094248 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 87.8 6.24e-19   NR XP_625504.1 353152 g6125 i0 60.5 2 76 30 100 0 228 1 183 258 XP_625504.1 60S ribosomal protein L7A, partial [Cryptosporidium parvum Iowa II] diamond 456 88.6 0.99097065462754 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;