RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1036688", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA1036688 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4836156 4836156 PRJNA1036688_P_NODE_7904_length_197_cov_1.418750_g7612_i0 PRJNA1036688 7904 197 1.41875 2.7949375 Veneridae 6592 Mollusca Mollusca 353 4.18e-93   NTclustered gi|557884386|gb|KC429499.1| 55715 g7612 i0 98.985 102.38578680203 197 2 100 0 1 197 2198 2394 Venus verrucosa voucher BivAToL-176 28S ribosomal RNA gene, partial sequence blastn 20170 353 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Venus Venus verrucosa
6111258 6111258 PRJNA1036688_P_NODE_5525_length_254_cov_4.188940_g5233_i0 PRJNA1036688 5525 254 4.18894 10.6399076 Veneridae 6592 Mollusca Mollusca 451 1.95e-122   NTclustered gi|194594428|gb|EU660824.1| 98293 g5233 i0 98.819 99.9842519685039 254 2 100 1 1 254 859 607 Austrovenus stutchburyi isolate AstuI1 18S ribosomal RNA gene, partial sequence blastn 25396 451 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Austrovenus Austrovenus stutchburyi
19295487 19295487 PRJNA1036688_P_NODE_5016_length_272_cov_1.991489_g4724_i0 PRJNA1036688 5016 272 1.991489 5.41685008 Metazoa 33208 Mollusca Mollusca 150 4.359999999999999e-43   NR XP_050413940.1 6465 g4724 i0 71.1 78.4191176470588 90 26 99.3 0 2 271 82 171 XP_050413940.1 60S ribosomal protein L8 [Patella vulgata] diamond 21330 150 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
23121898 23121898 PRJNA1036688_P_NODE_10259_length_167_cov_1.761538_g9967_i0 PRJNA1036688 10259 167 1.761538 2.94176846 Magallana gigas 29159 Mollusca Mollusca 56.5 0.001   NTclustered gi|2751229767|ref|XM_066073713.1| 29159 g9967 i0 100 0.179640718562874 30 0 18 0 1 30 2409 2438 PREDICTED: Magallana gigas uncharacterized protein (LOC117683724), mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
30825059 30825059 PRJNA1036688_P_NODE_11714_length_154_cov_2.666667_g11422_i0 PRJNA1036688 11714 154 2.666667 4.10666718 Elysia marginata 1093978 Mollusca Mollusca 100 3.47e-26   NR GFS19501.1 1093978 g11422 i0 76.5 6.66233766233766 51 12 99.4 0 154 2 3 53 GFS19501.1 40S ribosomal protein S29 [Elysia marginata] diamond 1026 100 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Elysia Elysia marginata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;