RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1036688", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1036688 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3996145 3996145 PRJNA1036688_P_NODE_2164_length_472_cov_2.928736_g1875_i0 PRJNA1036688 2164 472 2.928736 13.82363392 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 665 0   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g1875 i0 92.178 27.4004237288136 473 34 100 3 1 472 1103185 1102715 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 12933 665 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
8661266 8661266 PRJNA1036688_P_NODE_8207_length_192_cov_2.161290_g7915_i0 PRJNA1036688 8207 192 2.16129 4.1496768 Gemmatimonas 173479 Bacteria Bacteria 300 5.350000000000001e-77   NTclustered gi|470475286|ref|NR_076270.1| 173480 g7915 i0 94.792 42.3645833333333 192 10 100 0 1 192 30 221 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 8134 300 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;