RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1035005" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15471881 15471881 PRJNA1035005_P_NODE_65233_length_249_cov_0.886364_g64827_i0 PRJNA1035005 65233 249 0.886364 2.20704636 Mycoplasmopsis bovis 28903 Bacteria Bacteria 54.7 0.006   NTclustered gi|1951494791|gb|CP058493.1| 28903 g64827 i0 96.875 0.1285140562249 32 1 13 0 32 63 688253 688284 Mycoplasmopsis bovis strain Mb275 chromosome blastn 32 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis
19294907 19294907 PRJNA1035005_P_NODE_77556_length_245_cov_0.906977_g77150_i0 PRJNA1035005 77556 245 0.906977 2.22209365 Metamycoplasma orale 2121 Bacteria Bacteria 364 2.5e-96   NTclustered gi|1563679895|emb|LR214940.1| 2121 g77150 i0 93.469 1 245 16 100 0 1 245 439895 440139 Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 blastn 245 364 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;