RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1035005", tax_phylum = "Armatimonadota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27161290 27161290 PRJNA1035005_P_NODE_18542_length_307_cov_1.000000_g18136_i0 PRJNA1035005 18542 307 1 3.07 Armatimonadia bacterium 2663015 Bacteria Bacteria 148 8.65e-40   NR MEN6549441.1 2663015 g18136 i0 64.7 2.99022801302932 102 36 99.7 0 306 1 259 360 MEN6549441.1 site-specific DNA-methyltransferase [Armatimonadia bacterium] diamond 918 148 1 Bacteria   Bacillati Armatimonadota Armatimonadia       Armatimonadia bacterium
29592633 29592633 PRJNA1035005_P_NODE_87710_length_236_cov_2.380368_g87304_i0 PRJNA1035005 87710 236 2.380368 5.61766848 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 152 1.4499999999999998e-42   NR MFN3730441.1 2682144 g87304 i0 100 0.991525423728814 78 0 99.2 0 1 234 92 169 MFN3730441.1 diguanylate cyclase [Fimbriimonadaceae bacterium] diamond 234 152 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
30098252 30098252 PRJNA1035005_P_NODE_61552_length_250_cov_1.474576_g61146_i0 PRJNA1035005 61552 250 1.474576 3.68644 Armatimonadota bacterium 2033014 Bacteria Bacteria 63.5 1.87e-9   NR MCX6360434.1 2033014 g61146 i0 42.5 1.908 80 44 93.6 2 239 6 236 315 MCX6360434.1 SBBP repeat-containing protein [Armatimonadota bacterium] diamond 477 63.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31836594 31836594 PRJNA1035005_P_NODE_5657_length_447_cov_2.168449_g5257_i0 PRJNA1035005 5657 447 2.168449 9.69296703 Armatimonadota bacterium 2033014 Bacteria Bacteria 58.9 1.65e-7   NR MBC8139864.1 2033014 g5257 i0 52.9 0.342281879194631 51 23 33.6 1 1 150 125 175 MBC8139864.1 pyridoxamine 5'-phosphate oxidase family protein [Armatimonadota bacterium] diamond 153 58.9 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;