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contig_metadata

21 rows where bioproject = "PRJNA1035005", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 21 ✖

tax_kingdom 1

  • Orthornavirae · 21 ✖

bioproject 1

  • PRJNA1035005 · 21 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1443352 1443352 PRJNA1035005_P_NODE_11642_length_348_cov_1.090909_g11237_i0 PRJNA1035005 11642 348 1.090909 3.79636332 Tobamovirus fructirugosum 3432872 Viruses Viruses 643 4.279999999999998e-180   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g11237 i0 100 100 348 0 100 0 1 348 1383 1730 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 34800 643 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
2719064 2719064 PRJNA1035005_P_NODE_13903_length_330_cov_1.723735_g13497_i0 PRJNA1035005 13903 330 1.723735 5.6883255 Potexvirus pepini 3433856 Viruses Viruses 599 8.849999999999995e-167   NTclustered gi|251821320|emb|FN429033.1| 112229 g13497 i0 99.394 99.9969696969697 330 2 100 0 1 330 620 291 Pepino mosaic virus partial CP gene for coat protein, strain PV-0554, genomic RNA blastn 32999 599 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
2719193 2719193 PRJNA1035005_P_NODE_27363_length_286_cov_1.417840_g26957_i0 PRJNA1035005 27363 286 1.41784 4.0550224 Allexivirus alphallii 3433708 Viruses Viruses 516 7.799999999999999e-142   NTclustered gi|1722560694|gb|MN059278.1| 12433 g26957 i0 99.298 46.6818181818182 285 2 99 0 2 286 3559 3275 Garlic virus A isolate G39, complete genome blastn 13351 516 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Allexivirus Allexivirus alphallii
3995296 3995296 PRJNA1035005_P_NODE_29924_length_282_cov_3.023923_g29518_i0 PRJNA1035005 29924 282 3.023923 8.52746286 brine shrimp tymo-like virus 1 2900478 Viruses Viruses 510 3.57e-140   NTclustered gi|2209095027|gb|OL472799.1| 2900478 g29518 i0 99.291 3.00709219858156 282 2 100 0 1 282 5690 5409 MAG: Brine shrimp tymo-like virus 1 isolate YC/91 RNA-dependent RNA polymerase and coat superfamily protein genes, complete cds blastn 848 510 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Tymoviridae   brine shrimp tymo-like virus 1
3995334 3995334 PRJNA1035005_P_NODE_3584_length_572_cov_2.184369_g3191_i0 PRJNA1035005 3584 572 2.184369 12.49459068 Potexvirus pepini 3433856 Viruses Viruses 1042 0   NTclustered gi|2675378618|gb|PP116314.1| 112229 g3191 i0 99.649 59.520979020979 570 2 99 0 1 570 1168 1737 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 34046 1042 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
6111062 6111062 PRJNA1035005_P_NODE_5305_length_461_cov_1.206186_g4905_i0 PRJNA1035005 5305 461 1.206186 5.56051746 Potexvirus 12176 Viruses Viruses 835 0   NTclustered gi|2675378618|gb|PP116314.1| 112229 g4905 i0 99.349 81.5162689804772 461 3 100 0 1 461 2857 2397 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 37579 835 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
8660926 8660926 PRJNA1035005_P_NODE_2327_length_760_cov_2.374090_g1952_i0 PRJNA1035005 2327 760 2.37409 18.043084 Potexvirus 12176 Viruses Viruses 1393 0   NTclustered gi|2675378618|gb|PP116314.1| 112229 g1952 i0 99.737 100 760 2 100 0 1 760 4638 5397 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 76000 1393 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
8661047 8661047 PRJNA1035005_P_NODE_5687_length_446_cov_1.718499_g5287_i0 PRJNA1035005 5687 446 1.718499 7.66450554 Potexvirus 12176 Viruses Viruses 824 0   NTclustered gi|2106121581|gb|MW848530.1| 112229 g5287 i0 100 58.5762331838565 446 0 100 0 1 446 2083 2528 Pepino mosaic virus isolate NGSTPS18, complete genome blastn 26125 824 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
9096476 9096476 PRJNA1035005_P_NODE_4728_length_490_cov_2.062350_g4328_i0 PRJNA1035005 4728 490 2.06235 10.105515 brine shrimp tymo-like virus 1 2900478 Viruses Viruses 828 0   NTclustered gi|2209095027|gb|OL472799.1| 2900478 g4328 i0 97.143 1 490 14 100 0 1 490 4238 4727 MAG: Brine shrimp tymo-like virus 1 isolate YC/91 RNA-dependent RNA polymerase and coat superfamily protein genes, complete cds blastn 490 828 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Tymoviridae   brine shrimp tymo-like virus 1
9935839 9935839 PRJNA1035005_P_NODE_12728_length_338_cov_3.532075_g12323_i0 PRJNA1035005 12728 338 3.532075 11.9384135 Potexvirus 12176 Viruses Viruses 614 3.2499999999999993e-171   NTclustered gi|2523281636|gb|OR082776.1| 112229 g12323 i0 99.408 98.8757396449704 338 2 100 0 1 338 47 384 Pepino mosaic virus isolate DSMZ PV-0999, complete genome blastn 33420 614 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
10372070 10372070 PRJNA1035005_P_NODE_3989_length_535_cov_2.261905_g3591_i0 PRJNA1035005 3989 535 2.261905 12.10119175 brine shrimp tymo-like virus 1 2900478 Viruses Viruses 854 0   NTclustered gi|2209095027|gb|OL472799.1| 2900478 g3591 i0 95.841 0.988785046728972 529 21 99 1 7 535 5816 6343 MAG: Brine shrimp tymo-like virus 1 isolate YC/91 RNA-dependent RNA polymerase and coat superfamily protein genes, complete cds blastn 529 854 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Tymoviridae   brine shrimp tymo-like virus 1
11211159 11211159 PRJNA1035005_P_NODE_4089_length_528_cov_2.006593_g3691_i0 PRJNA1035005 4089 528 2.006593 10.59481104 Potexvirus 12176 Viruses Viruses 965 0   NTclustered gi|375808845|gb|JN835466.1| 112229 g3691 i0 99.621 97.6325757575758 528 2 100 0 1 528 4040 4567 Pepino mosaic virus strain CH2, complete genome blastn 51550 965 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
11647451 11647451 PRJNA1035005_P_NODE_51270_length_255_cov_1.714286_g50864_i0 PRJNA1035005 51270 255 1.714286 4.3714293 Potexvirus pepini 3433856 Viruses Viruses 472 1.5e-128   NTclustered gi|2106121581|gb|MW848530.1| 112229 g50864 i0 100 41.4980392156863 255 0 100 0 1 255 3414 3160 Pepino mosaic virus isolate NGSTPS18, complete genome blastn 10582 472 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
12486600 12486600 PRJNA1035005_P_NODE_13030_length_336_cov_2.019011_g12624_i0 PRJNA1035005 13030 336 2.019011 6.78387696 Potexvirus 12176 Viruses Viruses 616 8.96e-172   NTclustered gi|2675378618|gb|PP116314.1| 112229 g12624 i0 99.702 60.7678571428571 336 1 100 0 1 336 3198 3533 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 20418 616 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
17585736 17585736 PRJNA1035005_P_NODE_6254_length_429_cov_1.314607_g5852_i0 PRJNA1035005 6254 429 1.314607 5.63966403 Potexvirus 12176 Viruses Viruses 776 0   NTclustered gi|2675378618|gb|PP116314.1| 112229 g5852 i0 99.301 88.013986013986 429 3 100 0 1 429 3209 2781 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 37758 776 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18020500 18020500 PRJNA1035005_P_NODE_1395_length_1084_cov_2.214639_g1096_i0 PRJNA1035005 1395 1084 2.214639 24.00668676 Potexvirus pepini 3433856 Viruses Viruses 2002 0   NTclustered gi|1345606524|gb|MF422616.1| 112229 g1096 i0 100 98.8717712177122 1084 0 100 0 1 1084 17 1100 Pepino mosaic virus isolate LP_HYT25, complete genome blastn 107177 2002 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18020720 18020720 PRJNA1035005_P_NODE_4075_length_529_cov_2.778509_g3677_i0 PRJNA1035005 4075 529 2.778509 14.69831261 Potexvirus pepini 3433856 Viruses Viruses 931 0   NTclustered gi|1345606524|gb|MF422616.1| 112229 g3677 i0 100 95.3534971644612 504 0 95 0 1 504 5282 5785 Pepino mosaic virus isolate LP_HYT25, complete genome blastn 50442 931 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18021074 18021074 PRJNA1035005_P_NODE_86775_length_240_cov_2.802395_g86369_i0 PRJNA1035005 86775 240 2.802395 6.725748 Potexvirus pepini 3433856 Viruses Viruses 444 3.05e-120   NTclustered gi|2106121581|gb|MW848530.1| 112229 g86369 i0 100 100 240 0 100 0 1 240 4752 4991 Pepino mosaic virus isolate NGSTPS18, complete genome blastn 24000 444 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18859522 18859522 PRJNA1035005_P_NODE_5715_length_445_cov_1.677419_g5315_i0 PRJNA1035005 5715 445 1.677419 7.46451455 Potexvirus 12176 Viruses Viruses 822 0   NTclustered gi|2419393209|gb|ON398497.1| 112229 g5315 i0 100 39.6696629213483 445 0 100 0 1 445 3145 2701 Pepino mosaic virus isolate DSMZ PV-0554, complete genome blastn 17653 822 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
21845556 21845556 PRJNA1035005_P_NODE_14238_length_328_cov_1.435294_g13832_i0 PRJNA1035005 14238 328 1.435294 4.70776432 brine shrimp tymo-like virus 1 2900478 Viruses Viruses 556 5.36e-154   NTclustered gi|2209095027|gb|OL472799.1| 2900478 g13832 i0 97.256 1.71951219512195 328 9 100 0 1 328 4226 3899 MAG: Brine shrimp tymo-like virus 1 isolate YC/91 RNA-dependent RNA polymerase and coat superfamily protein genes, complete cds blastn 564 556 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Tymoviridae   brine shrimp tymo-like virus 1
23960333 23960333 PRJNA1035005_P_NODE_9519_length_370_cov_1.050505_g9115_i0 PRJNA1035005 9519 370 1.050505 3.8868685 Tobamovirus 12234 Viruses Viruses 673 0   NTclustered gi|2201445597|gb|OM515237.1| 1761477 g9115 i0 99.459 100 370 2 100 0 1 370 5898 5529 Tomato brown rugose fruit virus isolate 6166394_2, complete genome blastn 37000 673 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;