RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA1035005", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 14 ✖

tax_kingdom 1

  • Metazoa · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA1035005 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12922533 12922533 PRJNA1035005_P_NODE_35451_length_275_cov_1.930693_g35045_i0 PRJNA1035005 35451 275 1.930693 5.30940575 Anneissia japonica 1529436 Echinodermata other_Eukaryota 52.8 0.025   NTclustered gi|1826622945|ref|XR_004444679.1| 1529436 g35045 i0 100 0.101818181818182 28 0 10 0 16 43 553 526 PREDICTED: Anneissia japonica uncharacterized LOC117103909 (LOC117103909), ncRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
27572270 27572270 PRJNA1035005_P_NODE_76644_length_245_cov_0.906977_g76238_i0 PRJNA1035005 76644 245 0.906977 2.22209365 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 69.3 6.26e-12   NR KAJ8042686.1 206669 g76238 i0 46.8 0.942857142857143 77 40 94.3 1 242 12 17 92 KAJ8042686.1 60S ribosomal protein L6 [Holothuria leucospilota] diamond 231 69.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
27690992 27690992 PRJNA1035005_P_NODE_65184_length_249_cov_0.886364_g64778_i0 PRJNA1035005 65184 249 0.886364 2.20704636 Metazoa 33208 Echinodermata other_Eukaryota 104 8.499999999999999e-24   NR XP_033634554.1 7604 g64778 i0 60 10.7469879518072 80 32 96.4 0 244 5 608 687 XP_033634554.1 elongation factor-like GTPase 1 [Asterias rubens] diamond 2676 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27911367 27911367 PRJNA1035005_P_NODE_12545_length_340_cov_1.460674_g12140_i0 PRJNA1035005 12545 340 1.460674 4.9662916 Opisthokonta 33154 Echinodermata other_Eukaryota 167 1.13e-46   NR KAJ8035209.1 206669 g12140 i0 71.2 7.72058823529412 111 32 97.9 0 1 333 271 381 KAJ8035209.1 Cystathionine beta-synthase [Holothuria leucospilota] diamond 2625 167 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
28140883 28140883 PRJNA1035005_P_NODE_21945_length_293_cov_2.313636_g21539_i0 PRJNA1035005 21945 293 2.313636 6.77895348 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 91.7 1.32e-20   NR XP_041471633.1 7654 g21539 i0 49.5 0.993174061433447 97 48 99.3 1 292 2 4 99 XP_041471633.1 quinone reductase-like [Lytechinus variegatus] diamond 291 91.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
28488047 28488047 PRJNA1035005_P_NODE_4707_length_491_cov_1.906699_g4307_i0 PRJNA1035005 4707 491 1.906699 9.36189209 Patiria miniata 46514 Echinodermata other_Eukaryota 60.5 3.07e-7   NR XP_038074569.1 46514 g4307 i0 26.8 0.959266802443992 157 98 90.4 4 6 449 41 189 XP_038074569.1 dye-decolorizing peroxidase msp1-like [Patiria miniata] diamond 471 60.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
28930002 28930002 PRJNA1035005_P_NODE_2928_length_649_cov_1.368056_g2539_i0 PRJNA1035005 2928 649 1.368056 8.87868344 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 115 9.83e-26   NR KAJ8019731.1 206669 g2539 i0 35.8 0.993836671802773 215 124 97.1 9 3 632 1015 1220 KAJ8019731.1 A disintegrin and metalloproteinase with thrombospondin motifs 20 [Holothuria leucospilota] diamond 645 115 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
29308781 29308781 PRJNA1035005_P_NODE_85489_length_242_cov_0.923077_g85083_i0 PRJNA1035005 85489 242 0.923077 2.23384634 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 61.6 7.91e-9   NR PIK52582.1 307972 g85083 i0 49 1.21487603305785 49 25 60.7 0 3 149 35 83 PIK52582.1 hypothetical protein BSL78_10524 [Apostichopus japonicus] diamond 294 61.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
30098255 30098255 PRJNA1035005_P_NODE_67092_length_248_cov_1.411429_g66686_i0 PRJNA1035005 67092 248 1.411429 3.50034392 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 82.8 3.1e-16   NR XP_041455728.1 7654 g66686 i0 46.9 2.89112903225806 81 37 90.7 2 225 1 486 566 XP_041455728.1 piggyBac transposable element-derived protein 4-like [Lytechinus variegatus] diamond 717 83.6 0.990430622009569 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
30161311 30161311 PRJNA1035005_P_NODE_47652_length_260_cov_1.251337_g47246_i0 PRJNA1035005 47652 260 1.251337 3.2534762 Asterias rubens 7604 Echinodermata other_Eukaryota 65.9 8.21e-11   NR XP_033630533.1 7604 g47246 i0 51.4 1.58076923076923 70 33 79.6 1 207 1 2 71 XP_033630533.1 apolipoprotein D-like [Asterias rubens] diamond 411 65.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
31290963 31290963 PRJNA1035005_P_NODE_16135_length_316_cov_2.481481_g15729_i0 PRJNA1035005 16135 316 2.481481 7.84147996 root 1 Root_unresolved Root_unresolved 114 6.08e-28   NR XP_041463380.1 7654 g15729 i0 59.4 2.98101265822785 106 41 98.7 1 3 314 230 335 XP_041463380.1 aqualysin-1-like [Lytechinus variegatus] diamond 942 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
31394146 31394146 PRJNA1035005_P_NODE_60196_length_251_cov_0.876404_g59790_i0 PRJNA1035005 60196 251 0.876404 2.19977404 Diadema antillarum 105358 Echinodermata other_Eukaryota 51.6 3.06e-5   NR XP_071492921.1 105358 g59790 i0 45.6 0.681274900398406 57 31 68.1 0 171 1 443 499 XP_071492921.1 calcyphosin-2-like [Diadema antillarum] diamond 171 51.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
32525222 32525222 PRJNA1035005_P_NODE_3199_length_613_cov_6.235185_g2809_i0 PRJNA1035005 3199 613 6.235185 38.22168405 Metazoa 33208 Echinodermata other_Eukaryota 153 5.23e-44   NR XP_033632396.1 7604 g2809 i0 66.1 4.05709624796085 118 40 57.7 0 532 179 5 122 XP_033632396.1 60S ribosomal protein L31-like [Asterias rubens] diamond 2487 154 0.993506493506494 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
32596105 32596105 PRJNA1035005_P_NODE_22620_length_292_cov_1.424658_g22214_i0 PRJNA1035005 22620 292 1.424658 4.16000136 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 48.1 8.32e-4   NR XP_041458312.1 7654 g22214 i0 50 0.513698630136986 50 22 48.3 1 31 171 212 261 XP_041458312.1 uncharacterized protein KIAA1958-like [Lytechinus variegatus] diamond 150 48.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;