RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA1035005", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 29 ✖

tax_clade 1

  • Sar · 29 ✖

bioproject 1

  • PRJNA1035005 · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169036 169036 PRJNA1035005_P_NODE_67481_length_248_cov_0.891429_g67075_i0 PRJNA1035005 67481 248 0.891429 2.21074392 Sterkiella nova 200597 SAR_Eukaryotes SAR_Eukaryotes 104 6.11e-18   NTclustered gi|405113123|gb|JX441315.1| 200597 g67075 i0 87.778 0.362903225806452 90 10 36 1 5 93 341 252 Sterkiella nova macronuclear nanochromosome, complete sequence blastn 90 104 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella nova
1443362 1443362 PRJNA1035005_P_NODE_12922_length_337_cov_1.477273_g12517_i0 PRJNA1035005 12922 337 1.477273 4.97841001 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 141 2.32e-36   NR CAI2380366.1 5936 g12517 i0 58.7 13.7715133531157 109 45 97 0 11 337 794 902 CAI2380366.1 unnamed protein product [Moneuplotes crassus] diamond 4641 142 0.992957746478873 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
3558591 3558591 PRJNA1035005_P_NODE_79763_length_244_cov_0.912281_g79357_i0 PRJNA1035005 79763 244 0.912281 2.22596564 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 191 4.47e-44   NTclustered gi|10793|emb|X12769.1| 5908 g79357 i0 82.488 60.2172131147541 217 38 89 0 1 217 345 129 Tetrahymena pyriformis beta-tubulin gene 2 (beta-TT2) blastn 14693 191 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
3995489 3995489 PRJNA1035005_P_NODE_57784_length_252_cov_0.871508_g57378_i0 PRJNA1035005 57784 252 0.871508 2.19620016 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 204 5.96e-48   NTclustered gi|290684|gb|J04534.1|EUPBTUB 5936 g57378 i0 82.353 96.2539682539683 238 38 94 4 1 236 1309 1074 E.crassus macronuclear beta-tubulin gene, complete cds blastn 24256 204 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
7821341 7821341 PRJNA1035005_P_NODE_25287_length_289_cov_1.134259_g24881_i0 PRJNA1035005 25287 289 1.134259 3.27800851 Euplotes focardii 36767 SAR_Eukaryotes SAR_Eukaryotes 219 2.49e-52   NTclustered gi|603435|gb|S72098.1| 36767 g24881 i0 87.368 57.8442906574394 190 24 66 0 100 289 1320 1131 Euplotes focardii beta-tubulin gene, complete cds blastn 16717 219 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes focardii
8660959 8660959 PRJNA1035005_P_NODE_3147_length_620_cov_3.012797_g2757_i0 PRJNA1035005 3147 620 3.012797 18.6793414 Isotricha 5986 SAR_Eukaryotes SAR_Eukaryotes 608 2.9099999999999987e-169   NTclustered gi|92790159|emb|AJ965265.1| 5987 g2757 i0 84.466 192.527419354839 618 95 99 1 2 619 160 776 Isotricha prostoma partial mRNA for Polyubiqutin 3 (polyubiqutin 3 gene) blastn 119367 610 0.99672131147541 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha prostoma
9935825 9935825 PRJNA1035005_P_NODE_10408_length_360_cov_1.087108_g10003_i0 PRJNA1035005 10408 360 1.087108 3.9135888 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 322 2.35e-83   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g10003 i0 98.361 56.8722222222222 183 3 51 0 1 183 2900 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 20474 322 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13761292 13761292 PRJNA1035005_P_NODE_6171_length_431_cov_1.907821_g5769_i0 PRJNA1035005 6171 431 1.907821 8.22270851 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.012   NTclustered gi|471232194|ref|XM_004037166.1| 5932 g5769 i0 96.875 0.206496519721578 32 1 7 0 246 277 1407 1376 Ichthyophthirius multifiliis hypothetical protein (IMG5_058710) mRNA, partial cds blastn 89 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
15035609 15035609 PRJNA1035005_P_NODE_70512_length_247_cov_0.896552_g70106_i0 PRJNA1035005 70512 247 0.896552 2.21448344 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 89 2.07e-18   NR XP_001024804.2 312017 g70106 i0 57.5 0.97165991902834 80 31 97.2 2 242 3 20 96 XP_001024804.2 kinesin motor catalytic domain protein [Tetrahymena thermophila SB210] diamond 240 89 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
19294863 19294863 PRJNA1035005_P_NODE_70356_length_247_cov_0.896552_g69950_i0 PRJNA1035005 70356 247 0.896552 2.21448344 Planilamina ovata 2684848 SAR_Eukaryotes SAR_Eukaryotes 346 9.14e-91   NTclustered gi|1784308423|gb|MN830171.1| 2684848 g69950 i0 94.273 18.3643724696356 227 11 91 2 22 247 1772 1547 Planilamina ovata isolate LJ-II-20170502 large subunit ribosomal RNA gene, partial sequence blastn 4536 346 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Planilamina Planilamina ovata
23121071 23121071 PRJNA1035005_P_NODE_38239_length_272_cov_1.206030_g37833_i0 PRJNA1035005 38239 272 1.20603 3.2804016 root 1 Root_unresolved Root_unresolved 140 2.6299999999999996e-37   NR CDW89765.1 5949 g37833 i0 77.8 40.2352941176471 90 20 99.3 0 272 3 133 222 CDW89765.1 vacuolar atp synthase subunit b [Stylonychia lemnae] diamond 10944 141 0.99290780141844 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
26877201 26877201 PRJNA1035005_P_NODE_15461_length_320_cov_2.360324_g15055_i0 PRJNA1035005 15461 320 2.360324 7.5530368 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 57.4 6.33e-7   NR CAG9326882.1 1481888 g15055 i0 63.4 1.7625 41 15 38.4 0 320 198 237 277 CAG9326882.1 unnamed protein product [Blepharisma stoltei] diamond 564 57.4 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
27509312 27509312 PRJNA1035005_P_NODE_80483_length_244_cov_0.912281_g80077_i0 PRJNA1035005 80483 244 0.912281 2.22596564 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.12e-5   NR XP_001437360.1 5888 g80077 i0 71.6 0.995901639344262 81 23 99.6 0 244 2 196 276 XP_001437360.1 uncharacterized protein GSPATT00007403001 [Paramecium tetraurelia] diamond 243 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
27698921 27698921 PRJNA1035005_P_NODE_20064_length_300_cov_1.713656_g19658_i0 PRJNA1035005 20064 300 1.713656 5.140968 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 92.8 1.58e-19   NR XP_004023968.1 5932 g19658 i0 50 1.66 96 34 96 3 290 3 85 166 XP_004023968.1 NADPH adrenodoxin oxidoreductase, putative [Ichthyophthirius multifiliis] diamond 498 92.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
29119643 29119643 PRJNA1035005_P_NODE_1309_length_1133_cov_5.769811_g1022_i0 PRJNA1035005 1309 1133 5.769811 65.37195863 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 52 6.4e-4   NR CAG9321912.1 1481888 g1022 i0 37.5 0.296557811120918 112 60 29.7 1 66 401 2 103 CAG9321912.1 unnamed protein product [Blepharisma stoltei] diamond 336 52 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
29458440 29458440 PRJNA1035005_P_NODE_26550_length_287_cov_1.448598_g26144_i0 PRJNA1035005 26550 287 1.448598 4.15747626 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0471   NR CAD8067437.1 65129 g26144 i0 29.5 1.62020905923345 88 55 92 3 7 270 516 596 CAD8067437.1 unnamed protein product [Paramecium sonneborni] diamond 465 43.5 0.990804597701149 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
29837534 29837534 PRJNA1035005_P_NODE_74471_length_246_cov_0.901734_g74065_i0 PRJNA1035005 74471 246 0.901734 2.21826564 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 49.7 8.58e-5   NR TNV79678.1 5974 g74065 i0 39.7 1.76829268292683 73 35 84.1 3 209 3 5 72 TNV79678.1 hypothetical protein FGO68_gene14841 [Halteria grandinella] diamond 435 50.1 0.992015968063872 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
30098261 30098261 PRJNA1035005_P_NODE_89352_length_228_cov_2.806452_g88945_i0 PRJNA1035005 89352 228 2.806452 6.39871056 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 70.5 4.46e-13   NR CAI2380469.1 5936 g88945 i0 45.7 0.921052631578947 70 38 92.1 0 18 227 26 95 CAI2380469.1 unnamed protein product [Moneuplotes crassus] diamond 210 70.5 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
30540679 30540679 PRJNA1035005_P_NODE_71953_length_247_cov_0.890805_g71547_i0 PRJNA1035005 71953 247 0.890805 2.20028835 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 99 6.57e-22   NR CAG9326425.1 1481888 g71547 i0 58 0.983805668016194 81 34 98.4 0 244 2 279 359 CAG9326425.1 unnamed protein product [Blepharisma stoltei] diamond 243 99 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
30603791 30603791 PRJNA1035005_P_NODE_77013_length_245_cov_0.906977_g76607_i0 PRJNA1035005 77013 245 0.906977 2.22209365 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 107 9.3e-25   NR KRX05422.1 266149 g76607 i0 61.2 14.9265306122449 85 28 98 1 245 6 80 164 KRX05422.1 P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus] diamond 3657 107 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
30730242 30730242 PRJNA1035005_P_NODE_53274_length_253_cov_1.483333_g52868_i0 PRJNA1035005 53274 253 1.483333 3.75283249 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 57.4 2.69e-7   NR CAG9318110.1 1481888 g52868 i0 37.6 1.00790513833992 85 50 98.4 3 251 3 202 285 CAG9318110.1 unnamed protein product [Blepharisma stoltei] diamond 255 57.4 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
30848682 30848682 PRJNA1035005_P_NODE_2174_length_797_cov_3.113260_g1807_i0 PRJNA1035005 2174 797 3.11326 24.8126822 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 177 2.3399999999999994e-52   NR OMJ92653.1 5963 g1807 i0 66.9 0.982434127979925 118 32 43.3 2 146 490 19 132 OMJ92653.1 hypothetical protein SteCoe_4526 [Stentor coeruleus] diamond 783 177 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
31046511 31046511 PRJNA1035005_P_NODE_55055_length_253_cov_0.866667_g54649_i0 PRJNA1035005 55055 253 0.866667 2.19266751 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 69.3 1.81e-11   NR KAL4465295.1 5901 g54649 i0 71.1 1.06719367588933 45 13 53.4 0 3 137 1117 1161 KAL4465295.1 hypothetical protein ABPG74_002009 [Tetrahymena malaccensis] diamond 270 69.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
31583950 31583950 PRJNA1035005_P_NODE_18636_length_306_cov_1.712446_g18230_i0 PRJNA1035005 18636 306 1.712446 5.24008476 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 68.9 1.16e-11   NR CAG9318716.1 1481888 g18230 i0 38.7 2.04901960784314 106 60 99 4 2 304 105 210 CAG9318716.1 unnamed protein product [Blepharisma stoltei] diamond 627 68.9 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
31646836 31646836 PRJNA1035005_P_NODE_12617_length_339_cov_2.984962_g12212_i0 PRJNA1035005 12617 339 2.984962 10.11902118 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 63.9 4.02e-9   NR XP_001033196.1 312017 g12212 i0 35.4 1.76991150442478 99 61 86.7 2 38 331 79 175 XP_001033196.1 kinase domain protein [Tetrahymena thermophila SB210] diamond 600 63.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32026691 32026691 PRJNA1035005_P_NODE_85278_length_242_cov_0.923077_g84872_i0 PRJNA1035005 85278 242 0.923077 2.23384634 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 64.3 7.69e-10   NR TNV79958.1 5974 g84872 i0 43.5 0.855371900826446 69 36 85.5 2 241 35 270 335 TNV79958.1 hypothetical protein FGO68_gene16271 [Halteria grandinella] diamond 207 64.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
32089917 32089917 PRJNA1035005_P_NODE_56318_length_252_cov_0.871508_g55912_i0 PRJNA1035005 56318 252 0.871508 2.19620016 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 57 1.95e-7   NR CDW87435.1 5949 g55912 i0 45.3 0.892857142857143 75 40 89.3 1 235 11 3 76 CDW87435.1 60s ribosomal protein l10a-1 [Stylonychia lemnae] diamond 225 57 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32525224 32525224 PRJNA1035005_P_NODE_85439_length_242_cov_0.923077_g85033_i0 PRJNA1035005 85439 242 0.923077 2.23384634 root 1 Root_unresolved Root_unresolved 107 2.75e-26   NR TNV76321.1 5974 g85033 i0 67.5 3.85537190082645 77 25 95.5 0 232 2 115 191 TNV76321.1 hypothetical protein FGO68_gene5784 [Halteria grandinella] diamond 933 107 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
32627359 32627359 PRJNA1035005_P_NODE_68860_length_248_cov_0.891429_g68454_i0 PRJNA1035005 68860 248 0.891429 2.21074392 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 87.8 5.23e-18   NR KRX09310.1 266149 g68454 i0 52.5 0.967741935483871 80 37 96.8 1 240 1 438 516 KRX09310.1 GroEL-like apical domain [Pseudocohnilembus persalinus] diamond 240 87.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;