RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where bioproject = "PRJNA1035005", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 32 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 32 ✖

bioproject 1

  • PRJNA1035005 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2283162 2283162 PRJNA1035005_P_NODE_72402_length_246_cov_1.803468_g71996_i0 PRJNA1035005 72402 246 1.803468 4.43653128 Rariglobus 2706524 Bacteria Bacteria 128 1.3499999999999999e-34   NR WP_144230045.1 2597822 g71996 i0 89 1.76829268292683 73 8 89 0 222 4 134 206 WP_144230045.1 hypothetical protein [Rariglobus hedericola] diamond 435 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Rariglobus Rariglobus hedericola
3995201 3995201 PRJNA1035005_P_NODE_16304_length_316_cov_0.958848_g15898_i0 PRJNA1035005 16304 316 0.958848 3.02995968 Prosthecobacter sp. 1965333 Bacteria Bacteria 185 2.2299999999999998e-54   NR WP_322282996.1 1965333 g15898 i0 83.8 15.9493670886076 105 17 99.7 0 316 2 179 283 WP_322282996.1 UDP-glucose 6-dehydrogenase [Prosthecobacter sp.] diamond 5040 185 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
6546863 6546863 PRJNA1035005_P_NODE_33746_length_278_cov_1.009756_g33340_i0 PRJNA1035005 33746 278 1.009756 2.80712168 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 161 2.36e-45   NR RYD84285.1 2026800 g33340 i0 82.6 0.992805755395683 92 16 99.3 0 2 277 286 377 RYD84285.1 MAG: DEAD/DEAH box helicase [Verrucomicrobiaceae bacterium] diamond 276 161 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
7821459 7821459 PRJNA1035005_P_NODE_41787_length_267_cov_1.608247_g41381_i0 PRJNA1035005 41787 267 1.608247 4.29401949 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 183 8.3e-42   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g41381 i0 82.326 20.1535580524345 215 34 80 4 37 249 3957034 3956822 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 5381 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
11647710 11647710 PRJNA1035005_P_NODE_84930_length_242_cov_0.923077_g84524_i0 PRJNA1035005 84930 242 0.923077 2.23384634 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 141 5.69e-38   NR HET6407947.1 2811408 g84524 i0 76.3 0.991735537190083 80 19 99.2 0 2 241 65 144 HET6407947.1 endo-1,4-beta-xylanase [Chthoniobacteraceae bacterium] diamond 240 141 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
14197623 14197623 PRJNA1035005_P_NODE_5872_length_440_cov_4.376022_g5472_i0 PRJNA1035005 5872 440 4.376022 19.2544968 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 78.6 6.16e-14   NR RYD71398.1 2026800 g5472 i0 37.2 0.770454545454546 113 70 77 1 96 434 14 125 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 339 78.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
20570098 20570098 PRJNA1035005_P_NODE_53097_length_253_cov_1.688889_g52691_i0 PRJNA1035005 53097 253 1.688889 4.27288917 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 383 7.17e-102   NTclustered gi|2874254065|emb|OY970130.1| 412056 g52691 i0 94.715 99.296442687747 246 13 97 0 1 246 5154269 5154514 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 25122 383 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
20570346 20570346 PRJNA1035005_P_NODE_84737_length_242_cov_0.923077_g84331_i0 PRJNA1035005 84737 242 0.923077 2.23384634 Nibricoccus sp. IMCC34717 3034021 Bacteria Bacteria 146 7.87e-39   NR WP_404425496.1 3034021 g84331 i0 87.5 0.991735537190083 80 10 99.2 0 242 3 235 314 WP_404425496.1 thioredoxin domain-containing protein [Nibricoccus sp. IMCC34717] diamond 240 146 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus sp. IMCC34717
24394700 24394700 PRJNA1035005_P_NODE_11400_length_350_cov_1.321300_g10995_i0 PRJNA1035005 11400 350 1.3213 4.62455 uncultured Opitutia bacterium 575426 Bacteria Bacteria 625 1.5499999999999995e-174   NTclustered gi|523452328|gb|KF182748.1| 575426 g10995 i0 98.857 99.8314285714286 350 4 100 0 1 350 481 830 Uncultured Opitutae bacterium clone S1-003 16S ribosomal RNA gene, partial sequence blastn 34941 625 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       uncultured Opitutia bacterium
24395061 24395061 PRJNA1035005_P_NODE_62200_length_250_cov_0.881356_g61794_i0 PRJNA1035005 62200 250 0.881356 2.20339 Prosthecobacter fusiformis 48464 Bacteria Bacteria 446 8.89e-121   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g61794 i0 98.8 45.784 250 3 100 0 1 250 1361 1610 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 11446 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
27098348 27098348 PRJNA1035005_P_NODE_75462_length_245_cov_1.686047_g75056_i0 PRJNA1035005 75462 245 1.686047 4.13081515 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 103 6.210000000000001e-26   NR RYD42285.1 2026800 g75056 i0 62.5 0.979591836734694 80 30 98 0 5 244 31 110 RYD42285.1 MAG: hypothetical protein EOP83_32900 [Verrucomicrobiaceae bacterium] diamond 240 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28069488 28069488 PRJNA1035005_P_NODE_46825_length_261_cov_1.281915_g46419_i0 PRJNA1035005 46825 261 1.281915 3.34579815 Bacteria 2 Bacteria Bacteria 170 6.14e-49   NR PYL71423.1 2026799 g46419 i0 88.4 24.7126436781609 86 10 98.9 0 260 3 199 284 PYL71423.1 MAG: kynurenine 3-monooxygenase [Verrucomicrobiota bacterium] diamond 6450 171 0.994152046783626 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28519634 28519634 PRJNA1035005_P_NODE_51027_length_255_cov_2.692308_g50621_i0 PRJNA1035005 51027 255 2.692308 6.8653854 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 89 1.44e-18   NR MES2466312.1 2026799 g50621 i0 93.3 0.529411764705882 45 3 52.9 0 137 3 1 45 MES2466312.1 Tm-1-like ATP-binding domain-containing protein [Verrucomicrobiota bacterium] diamond 135 89 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28582806 28582806 PRJNA1035005_P_NODE_41827_length_267_cov_1.608247_g41421_i0 PRJNA1035005 41827 267 1.608247 4.29401949 Prosthecobacter sp. 1965333 Bacteria Bacteria 128 4.89e-32   NR WP_395734386.1 1965333 g41421 i0 68.5 1 89 28 100 0 1 267 1876 1964 WP_395734386.1 LPD38 domain-containing protein [Prosthecobacter sp.] diamond 267 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
28614263 28614263 PRJNA1035005_P_NODE_65667_length_249_cov_0.886364_g65261_i0 PRJNA1035005 65667 249 0.886364 2.20704636 Opitutaceae bacterium 2006848 Bacteria Bacteria 44.3 0.0103   NR HXN36062.1 2006848 g65261 i0 41 2.46987951807229 61 36 73.5 0 2 184 217 277 HXN36062.1 acyltransferase [Opitutaceae bacterium] diamond 615 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29056412 29056412 PRJNA1035005_P_NODE_64728_length_249_cov_0.886364_g64322_i0 PRJNA1035005 64728 249 0.886364 2.20704636 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 149 1.71e-42   NR MBA2623633.1 2201154 g64322 i0 82.9 0.987951807228916 82 14 98.8 0 1 246 136 217 MBA2623633.1 glycosyltransferase family 2 protein [Chthoniobacterales bacterium] diamond 246 149 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29119650 29119650 PRJNA1035005_P_NODE_33109_length_278_cov_2.004878_g32703_i0 PRJNA1035005 33109 278 2.004878 5.57356084 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.7 0.00778   NR MEI6341235.1 2026799 g32703 i0 36 0.809352517985611 75 39 71.2 2 206 9 84 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 225 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29182743 29182743 PRJNA1035005_P_NODE_41209_length_268_cov_1.487179_g40803_i0 PRJNA1035005 41209 268 1.487179 3.98563972 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 47.4 0.00111   NR RYD47283.1 2026800 g40803 i0 50 0.492537313432836 44 22 49.3 0 137 268 35 78 RYD47283.1 MAG: hypothetical protein EOP83_28270 [Verrucomicrobiaceae bacterium] diamond 132 47.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29908972 29908972 PRJNA1035005_P_NODE_991_length_1375_cov_11.451613_g770_i0 PRJNA1035005 991 1375 11.451613 157.45967875 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 440 6.149999999999998e-150   NR RYD65414.1 2026800 g770 i0 77 0.617454545454545 283 63 61.7 1 328 1176 56 336 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 849 440 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30256697 30256697 PRJNA1035005_P_NODE_53492_length_253_cov_1.244444_g53086_i0 PRJNA1035005 53492 253 1.244444 3.14844332 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0213   NR MEI6341235.1 2026799 g53086 i0 48 0.592885375494071 50 24 56.9 1 60 203 109 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 150 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30635297 30635297 PRJNA1035005_P_NODE_23333_length_291_cov_1.431193_g22927_i0 PRJNA1035005 23333 291 1.431193 4.16477163 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 117 2.96e-28   NR MCB1208676.1 2026801 g22927 i0 63.9 1 97 35 100 0 291 1 310 406 MCB1208676.1 PQQ-binding-like beta-propeller repeat protein [Verrucomicrobiales bacterium] diamond 291 117 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31101274 31101274 PRJNA1035005_P_NODE_74355_length_246_cov_0.901734_g73949_i0 PRJNA1035005 74355 246 0.901734 2.21826564 Pseudomonadati 3379134 Bacteria Bacteria 69.7 3.22e-13   NR WP_165107190.1 1324935 g73949 i0 46.3 4.64634146341463 67 33 78 1 55 246 17 83 WP_165107190.1 isoamylase early set domain-containing protein [Limisphaera ngatamarikiensis] diamond 1143 70.1 0.994293865905849 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Limisphaeraceae Limisphaera Limisphaera ngatamarikiensis
31267494 31267494 PRJNA1035005_P_NODE_975_length_1387_cov_4.158295_g756_i0 PRJNA1035005 975 1387 4.158295 57.67555165 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 283 4.5199999999999994e-88   NR RYD71398.1 2026800 g756 i0 44.8 0.767844268204758 355 183 75.5 6 48 1094 14 361 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 1065 283 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31299051 31299051 PRJNA1035005_P_NODE_40935_length_268_cov_1.600000_g40529_i0 PRJNA1035005 40935 268 1.6 4.288 Chthoniobacter sp. 2510640 Bacteria Bacteria 95.1 6.4e-21   NR MCE9610321.1 2510640 g40529 i0 82.4 2.18283582089552 51 9 57.1 0 156 4 264 314 MCE9610321.1 hypothetical protein [Chthoniobacter sp.] diamond 585 95.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
31362502 31362502 PRJNA1035005_P_NODE_18316_length_308_cov_1.327660_g17910_i0 PRJNA1035005 18316 308 1.32766 4.0891928 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 50.4 8.01e-5   NR MBS0646863.1 2026799 g17910 i0 33 1.12012987012987 115 57 99.4 2 307 2 65 172 MBS0646863.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 345 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31394148 31394148 PRJNA1035005_P_NODE_6236_length_429_cov_3.508427_g5834_i0 PRJNA1035005 6236 429 3.508427 15.05115183 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 146 1.79e-39   NR RYD71398.1 2026800 g5834 i0 55.6 0.93006993006993 133 58 92.3 1 403 8 229 361 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 399 146 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31425575 31425575 PRJNA1035005_P_NODE_85596_length_242_cov_0.923077_g85190_i0 PRJNA1035005 85596 242 0.923077 2.23384634 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 139 7.69e-37   NR NLH73935.1 2026799 g85190 i0 82.5 1.98347107438017 80 14 99.2 0 241 2 318 397 NLH73935.1 cell envelope integrity protein CreD [Verrucomicrobiota bacterium] diamond 480 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31457361 31457361 PRJNA1035005_P_NODE_62076_length_250_cov_0.881356_g61670_i0 PRJNA1035005 62076 250 0.881356 2.20339 Candidatus Udaeobacter sp. 2665650 Bacteria Bacteria 72 1.03e-12   NR HEY4271026.1 2665650 g61670 i0 49.3 0.804 67 32 78 2 3 197 90 156 HEY4271026.1 DNA ligase [Candidatus Udaeobacter sp.] diamond 201 72 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Candidatus Udaeobacter Candidatus Udaeobacter sp.
31583954 31583954 PRJNA1035005_P_NODE_32536_length_279_cov_1.514563_g32130_i0 PRJNA1035005 32536 279 1.514563 4.22563077 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 128 1.37e-33   NR RYD84284.1 2026800 g32130 i0 62.6 0.978494623655914 91 34 97.8 0 2 274 198 288 RYD84284.1 MAG: hypothetical protein EOP84_05935 [Verrucomicrobiaceae bacterium] diamond 273 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31710287 31710287 PRJNA1035005_P_NODE_50577_length_256_cov_1.704918_g50171_i0 PRJNA1035005 50577 256 1.704918 4.36459008 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 103 7.25e-26   NR RYD70704.1 2026800 g50171 i0 56 0.984375 84 37 98.4 0 253 2 62 145 RYD70704.1 MAG: hypothetical protein EOP84_26230 [Verrucomicrobiaceae bacterium] diamond 252 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31931586 31931586 PRJNA1035005_P_NODE_43337_length_265_cov_1.625000_g42931_i0 PRJNA1035005 43337 265 1.625 4.30625 Opitutia bacterium 2026771 Bacteria Bacteria 107 2.52e-25   NR MBI2498203.1 2026771 g42931 i0 78.6 1.58490566037736 70 15 79.2 0 212 3 1 70 MBI2498203.1 sigma-70 family RNA polymerase sigma factor [Opitutia bacterium] diamond 420 107 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
32658694 32658694 PRJNA1035005_P_NODE_89500_length_228_cov_2.012903_g89093_i0 PRJNA1035005 89500 228 2.012903 4.5894188400000004 Opitutus sp. 1913982 Bacteria Bacteria 130 1.7199999999999999e-34   NR MSU24261.1 1913982 g89093 i0 80 3.93421052631579 75 15 98.7 0 2 226 189 263 MSU24261.1 glycerate kinase [Opitutus sp.] diamond 897 130 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;