RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1035005", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1035005 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29624098 29624098 PRJNA1035005_P_NODE_2510_length_717_cov_1.358696_g2130_i0 PRJNA1035005 2510 717 1.358696 9.74185032 Lentisphaerota bacterium 1932692 Bacteria Bacteria 53.1 3.91e-4   NR MCP3965836.1 1932692 g2130 i0 29.5 0.887029288702929 105 74 43.9 0 18 332 48 152 MCP3965836.1 winged helix-turn-helix domain-containing protein [Lentisphaerota bacterium] diamond 636 53.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29908953 29908953 PRJNA1035005_P_NODE_31391_length_281_cov_0.812500_g30985_i0 PRJNA1035005 31391 281 0.8125 2.283125 Lentisphaerota bacterium 1932692 Bacteria Bacteria 50.1 1.5e-4   NR MCP3965836.1 1932692 g30985 i0 38.6 1.44128113879004 88 46 87.5 2 9 254 267 352 MCP3965836.1 winged helix-turn-helix domain-containing protein [Lentisphaerota bacterium] diamond 405 50.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;