RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1035005", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA1035005 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18020760 18020760 PRJNA1035005_P_NODE_4675_length_492_cov_3.389021_g4275_i0 PRJNA1035005 4675 492 3.389021 16.67398332 Waddliaceae bacterium 2026802 Bacteria Bacteria 157 1.5699999999999996e-43   NR HEY4831209.1 2026802 g4275 i0 59 0.878048780487805 144 57 86.6 1 2 427 209 352 HEY4831209.1 F0F1 ATP synthase subunit alpha [Waddliaceae bacterium] diamond 432 157 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
27762010 27762010 PRJNA1035005_P_NODE_81304_length_243_cov_1.711765_g80898_i0 PRJNA1035005 81304 243 1.711765 4.15958895 Chlamydia psittaci 83554 Bacteria Bacteria 43.1 0.00219   NR EPP28188.1 1112246 g80898 i0 51.4 0.432098765432099 35 17 43.2 0 205 101 1 35 EPP28188.1 hypothetical protein CP082626L3_1420, partial [Chlamydia psittaci 08-2626_L3] diamond 105 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
28488058 28488058 PRJNA1035005_P_NODE_85387_length_242_cov_0.923077_g84981_i0 PRJNA1035005 85387 242 0.923077 2.23384634 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 50.1 9.89e-5   NR WP_337588737.1 83552 g84981 i0 37.1 1.53719008264463 62 39 76.9 0 56 241 993 1054 WP_337588737.1 ankyrin repeat domain-containing protein, partial [Parachlamydia acanthamoebae] diamond 372 50.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
29466363 29466363 PRJNA1035005_P_NODE_70450_length_247_cov_0.896552_g70044_i0 PRJNA1035005 70450 247 0.896552 2.21448344 Chlamydiia bacterium 2052156 Bacteria Bacteria 62 6.25e-9   NR MCB1118395.1 2052156 g70044 i0 42 1.93117408906883 81 47 98.4 0 3 245 141 221 MCB1118395.1 hypothetical protein [Chlamydiia bacterium] diamond 477 62 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
29498265 29498265 PRJNA1035005_P_NODE_45930_length_262_cov_1.444444_g45524_i0 PRJNA1035005 45930 262 1.444444 3.78444328 Chlamydiales bacterium 2047757 Bacteria Bacteria 108 1.41e-25   NR MCC5832159.1 2047757 g45524 i0 56.5 0.973282442748092 85 37 97.3 0 260 6 180 264 MCC5832159.1 RNA polymerase factor sigma-54 [Chlamydiales bacterium] diamond 255 108 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29782456 29782456 PRJNA1035005_P_NODE_2711_length_680_cov_1.008237_g2324_i0 PRJNA1035005 2711 680 1.008237 6.8560116 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 98.2 5.18e-20   NR MFI0434572.1 2052176 g2324 i0 40.1 0.758823529411765 172 89 73.2 6 25 522 107 270 MFI0434572.1 SET domain-containing protein-lysine N-methyltransferase [Parachlamydiaceae bacterium] diamond 516 98.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31014623 31014623 PRJNA1035005_P_NODE_58155_length_251_cov_2.359551_g57749_i0 PRJNA1035005 58155 251 2.359551 5.92247301 Chlamydiia bacterium 2052156 Bacteria Bacteria 144 7.51e-38   NR MCB1114390.1 2052156 g57749 i0 83.1 0.99203187250996006 83 14 99.2 0 250 2 526 608 MCB1114390.1 type II secretion system protein GspD [Chlamydiia bacterium] diamond 249 144 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
31077987 31077987 PRJNA1035005_P_NODE_76695_length_245_cov_0.906977_g76289_i0 PRJNA1035005 76695 245 0.906977 2.22209365 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 72 1.74e-12   NR HEY5259388.1 2047756 g76289 i0 43.6 2.84081632653061 78 41 95.5 1 234 1 77 151 HEY5259388.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 696 72 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;