RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1035005", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1035005 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6547229 6547229 PRJNA1035005_P_NODE_80326_length_244_cov_0.912281_g79920_i0 PRJNA1035005 80326 244 0.912281 2.22596564 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 329 9.08e-86   NTclustered gi|2874253978|emb|OY970303.1| 412054 g79920 i0 91.02 342.540983606557 245 20 100 2 1 244 1902644 1902401 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 83580 329 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
28614245 28614245 PRJNA1035005_P_NODE_2087_length_818_cov_9.424161_g1727_i0 PRJNA1035005 2087 818 9.424161 77.08963698 Longimicrobium sp. 2029185 Bacteria Bacteria 121 2.15e-29   NR HEX2080112.1 2029185 g1727 i0 36.8 3.90586797066015 220 121 78.9 8 734 90 2 208 HEX2080112.1 hypothetical protein [Longimicrobium sp.] diamond 3195 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30793365 30793365 PRJNA1035005_P_NODE_38574_length_271_cov_1.575758_g38168_i0 PRJNA1035005 38574 271 1.575758 4.27030418 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 154 2.1799999999999998e-43   NR HET9684428.1 2026741 g38168 i0 84.3 1.97047970479705 89 14 98.5 0 3 269 48 136 HET9684428.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadaceae bacterium] diamond 534 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30825034 30825034 PRJNA1035005_P_NODE_9754_length_367_cov_1.527211_g9349_i0 PRJNA1035005 9754 367 1.527211 5.60486437 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.3 0.036   NR MBI1722530.1 2026742 g9349 i0 36.9 0.907356948228883 111 61 85.8 4 3 317 38 145 MBI1722530.1 peptide chain release factor N(5)-glutamine methyltransferase [Gemmatimonadota bacterium] diamond 333 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31014610 31014610 PRJNA1035005_P_NODE_2075_length_820_cov_8.227577_g1715_i0 PRJNA1035005 2075 820 8.227577 67.4661314 Longimicrobium sp. 2029185 Bacteria Bacteria 121 2.15e-29   NR HEX2080112.1 2029185 g1715 i0 36.8 3.89634146341463 220 121 78.7 8 734 90 2 208 HEX2080112.1 hypothetical protein [Longimicrobium sp.] diamond 3195 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32745573 32745573 PRJNA1035005_P_NODE_62040_length_250_cov_0.881356_g61634_i0 PRJNA1035005 62040 250 0.881356 2.20339 Pseudomonadati 3379134 Bacteria Bacteria 82 6.49e-18   NR HYW06028.1 2029185 g61634 i0 55.6 2.94 81 36 97.2 0 243 1 25 105 HYW06028.1 DoxX family protein [Longimicrobium sp.] diamond 735 82.4 0.995145631067961 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;