RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1035005", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Sumerlaeota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1035005 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15471602 15471602 PRJNA1035005_P_NODE_25993_length_288_cov_1.260465_g25587_i0 PRJNA1035005 25993 288 1.260465 3.6301392 Candidatus Sumerlaea chitinivorans 2250252 Bacteria Bacteria 296 1.11e-75   NTclustered gi|1419285073|gb|CP030759.1| 2250252 g25587 i0 86.282 384.881944444444 277 33 95 5 1 274 162259 161985 Candidatus Sumerlaea chitinivorans isolate BY40 chromosome, complete genome blastn 110846 296 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae Candidatus Sumerlaea Candidatus Sumerlaea chitinivorans
32311711 32311711 PRJNA1035005_P_NODE_42819_length_266_cov_1.310881_g42413_i0 PRJNA1035005 42819 266 1.310881 3.48694346 candidate division BRC1 bacterium HGW-BRC1-1 2013722 Bacteria Bacteria 67 1.32e-10   NR PKO14817.1 2013722 g42413 i0 76.3 0.857142857142857 38 9 42.9 0 150 263 1 38 PKO14817.1 MAG: hypothetical protein CVU37_14060 [candidate division BRC1 bacterium HGW-BRC1-1] diamond 228 67 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota         candidate division BRC1 bacterium HGW-BRC1-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;