RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1034995" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1034995 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3995111 3995111 PRJNA1034995_S_NODE_51644_length_159_cov_2.775862_g51488_i0 PRJNA1034995 51644 159 2.775862 4.41362058 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 195 2.07e-45   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g51488 i0 92.593 28.3207547169811 135 10 85 0 3 137 3991031 3990897 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 4503 195 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
6546643 6546643 PRJNA1034995_S_NODE_54106_length_152_cov_3.935780_g53950_i0 PRJNA1034995 54106 152 3.93578 5.9823856 Pedosphaera parvula 1032527 Bacteria Bacteria 204 3.2399999999999996e-48   NTclustered gi|183579829|emb|AM905426.1| 320771 g53950 i0 90.85 81.6710526315789 153 12 100 2 1 152 1240 1089 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 12414 204 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
11647085 11647085 PRJNA1034995_S_NODE_41150_length_199_cov_6.134615_g40994_i0 PRJNA1034995 41150 199 6.134615 12.20788385 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 311 2.58e-80   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g40994 i0 98.851 21.7638190954774 174 2 87 0 1 174 3557873 3558046 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 4331 311 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
15471337 15471337 PRJNA1034995_S_NODE_34153_length_239_cov_4.362245_g33997_i0 PRJNA1034995 34153 239 4.362245 10.42576555 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 307 4.15e-79   NTclustered gi|226525339|gb|FJ872375.1| 156588 g33997 i0 92.523 239.983263598326 214 16 90 0 1 214 28254 28467 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 57356 307 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
18020278 18020278 PRJNA1034995_S_NODE_27595_length_291_cov_11.217742_g27439_i0 PRJNA1034995 27595 291 11.217742 32.64362922 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 219 2.5099999999999998e-52   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g27439 i0 85.854 1.19587628865979 205 29 70 0 59 263 1351055 1350851 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 348 219 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
30216649 30216649 PRJNA1034995_S_NODE_33352_length_244_cov_16.457711_g33196_i0 PRJNA1034995 33352 244 16.457711 40.15681484 Bacteria 2 Bacteria Bacteria 120 7.880000000000001e-33   NR MBI2814774.1 2026771 g33196 i0 77.6 1.81967213114754 76 17 93.4 0 242 15 3 78 MBI2814774.1 GxxExxY protein [Opitutia bacterium] diamond 444 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;