RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1034995" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1034995 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20569684 20569684 PRJNA1034995_S_NODE_39797_length_206_cov_2.257669_g39641_i0 PRJNA1034995 39797 206 2.257669 4.65079814 Aquisphaera giovannonii 406548 Bacteria Bacteria 65.8 2.31e-6   NTclustered gi|1730068067|gb|CP042997.1| 406548 g39641 i0 97.436 0.189320388349515 39 0 18 1 127 164 1166166 1166204 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 39 65.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
21845298 21845298 PRJNA1034995_S_NODE_24358_length_324_cov_12.601423_g24202_i0 PRJNA1034995 24358 324 12.601423 40.82861052 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 91.6 6.45e-14   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g24202 i0 88.312 25.820987654321 77 7 31 2 176 251 4377695 4377620 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 8366 91.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
30698589 30698589 PRJNA1034995_S_NODE_44854_length_183_cov_2.235714_g44698_i0 PRJNA1034995 44854 183 2.235714 4.09135662 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0427   NR MBZ0151840.1 2026780 g44698 i0 35.7 0.688524590163934 42 27 68.9 0 19 144 121 162 MBZ0151840.1 ABC transporter permease [Planctomycetota bacterium] diamond 126 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31489086 31489086 PRJNA1034995_S_NODE_43116_length_190_cov_4.564626_g42960_i0 PRJNA1034995 43116 190 4.564626 8.6727894 Planctomycetota bacterium 2026780 Bacteria Bacteria 42 0.0303   NR TET35009.1 2026780 g42960 i0 38.9 0.568421052631579 36 22 56.8 0 120 13 23 58 TET35009.1 MAG: hypothetical protein E3J72_12805 [Planctomycetota bacterium] diamond 108 42 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;