RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1034995" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 4 ✖

bioproject 1

  • PRJNA1034995 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3995035 3995035 PRJNA1034995_S_NODE_34804_length_235_cov_2.875000_g34648_i0 PRJNA1034995 34804 235 2.875 6.75625 Parvovirus macaca3116 3117124 Viruses Viruses 56.5 0.002   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g34648 i0 100 0.127659574468085 30 0 13 0 206 235 31 2 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 30 56.5 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
10371673 10371673 PRJNA1034995_S_NODE_29309_length_275_cov_13.168103_g29153_i0 PRJNA1034995 29309 275 13.168103 36.21228325 Parvovirus macaca3116 3117124 Viruses Viruses 56.5 0.002   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g29153 i0 100 0.210909090909091 30 0 11 0 244 273 3087 3116 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 58 56.5 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
10371761 10371761 PRJNA1034995_S_NODE_41649_length_197_cov_1.987013_g41493_i0 PRJNA1034995 41649 197 1.987013 3.91441561 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.017   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g41493 i0 100 0.142131979695431 28 0 14 0 1 28 3116 3089 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
15471318 15471318 PRJNA1034995_S_NODE_32173_length_253_cov_6.466667_g32017_i0 PRJNA1034995 32173 253 6.466667 16.36066751 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.023   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g32017 i0 100 0.110671936758893 28 0 11 0 1 28 1 28 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;