RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1034995", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1034995 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
168438 168438 PRJNA1034995_S_NODE_29581_length_273_cov_8.747826_g29425_i0 PRJNA1034995 29581 273 8.747826 23.88156498 Nitrospira moscoviensis 42253 Bacteria Bacteria 411 3.5899999999999996e-110   NTclustered gi|922305621|gb|CP011801.1| 42253 g29425 i0 93.773 172.794871794872 273 17 100 0 1 273 1278929 1278657 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 47173 411 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
30540661 30540661 PRJNA1034995_S_NODE_34833_length_234_cov_33.528796_g34677_i0 PRJNA1034995 34833 234 33.528796 78.45738264 Nitrospira sp. CG24E 1985129 Bacteria Bacteria 41.2 0.0374   NR THJ23569.1 1985129 g34677 i0 41.7 0.461538461538462 36 21 46.2 0 14 121 69 104 THJ23569.1 MAG: hypothetical protein CAF45_007795 [Nitrospira sp. CG24E] diamond 108 41.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24E

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;