RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1034995", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1034995 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15471400 15471400 PRJNA1034995_S_NODE_44233_length_185_cov_6.316901_g44077_i0 PRJNA1034995 44233 185 6.316901 11.68626685 Labilithrix luteola 1391654 Bacteria Bacteria 211 2.46e-50   NTclustered gi|913610804|gb|CP012333.1| 1391654 g44077 i0 93.056 271.751351351351 144 10 78 0 20 163 7089105 7088962 Labilithrix luteola strain DSM 27648, complete genome blastn 50274 211 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
32343301 32343301 PRJNA1034995_S_NODE_30559_length_265_cov_8.536036_g30403_i0 PRJNA1034995 30559 265 8.536036 22.6204954 Corallococcus sp. AS-1-6 2874599 Bacteria Bacteria 43.1 0.0347   NR WP_223761970.1 2874599 g30403 i0 40.4 0.588679245283019 52 31 58.9 0 28 183 343 394 WP_223761970.1 DUF418 domain-containing protein [Corallococcus sp. AS-1-6] diamond 156 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AS-1-6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;