RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1034995", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1034995 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11646965 11646965 PRJNA1034995_S_NODE_26110_length_305_cov_23.290076_g25954_i0 PRJNA1034995 26110 305 23.290076 71.0347318 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 134 1.92e-36   NR HRK07855.1 2026715 g25954 i0 100 0.590163934426229 60 0 59 0 23 202 225 284 HRK07855.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 180 134 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
12922075 12922075 PRJNA1034995_S_NODE_21751_length_357_cov_52.152866_g21595_i0 PRJNA1034995 21751 357 52.152866 186.18573162 Peredibacter starrii 28202 Bacteria Bacteria 562 1.26e-155   NTclustered gi|2631252187|gb|CP139487.1| 28202 g21595 i0 96.746 203.778711484594 338 10 94 1 1 337 512071 511734 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 72749 562 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21409661 21409661 PRJNA1034995_S_NODE_22317_length_350_cov_16.390879_g22161_i0 PRJNA1034995 22317 350 16.390879 57.3680765 Bacteriovorax 146784 Bacteria Bacteria 534 2.69e-147   NTclustered gi|1700689994|gb|CP030035.1| 960 g22161 i0 96.308 204.825714285714 325 12 93 0 26 350 1660347 1660671 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 71689 534 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30414618 30414618 PRJNA1034995_S_NODE_38833_length_211_cov_4.410714_g38677_i0 PRJNA1034995 38833 211 4.410714 9.30660654 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 94 3.660000000000001e-21   NR MBA2404080.1 2053517 g38677 i0 79.1 0.95260663507109 67 14 95.3 0 9 209 16 82 MBA2404080.1 hypothetical protein [Bdellovibrionales bacterium] diamond 201 94 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;