RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1034995", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1034995 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16745487 16745487 PRJNA1034995_S_NODE_40154_length_204_cov_3.714286_g39998_i0 PRJNA1034995 40154 204 3.714286 7.57714344 Abditibacteriota bacterium 2783868 Bacteria Bacteria 130 7.99e-26   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g39998 i0 87.611 3.06862745098039 113 13 55 1 48 159 5856383 5856495 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 626 130 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
28045841 28045841 PRJNA1034995_S_NODE_13005_length_580_cov_13.834264_g12875_i0 PRJNA1034995 13005 580 13.834264 80.2387312 Abditibacterium utsteinense 1960156 Bacteria Bacteria 233 1.5e-75   NR WP_105483285.1 1960156 g12875 i0 82.3 0.729310344827586 141 24 72.4 1 482 63 1 141 WP_105483285.1 hypothetical protein [Abditibacterium utsteinense] diamond 423 233 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae Abditibacterium Abditibacterium utsteinense
32248429 32248429 PRJNA1034995_S_NODE_14918_length_497_cov_41.555066_g14767_i0 PRJNA1034995 14918 497 41.555066 206.52867802 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 238 4.47e-71   NR HVF10769.1 2800791 g14767 i0 72.7 0.995975855130785 165 45 99.6 0 496 2 170 334 HVF10769.1 heavy metal translocating P-type ATPase [Abditibacteriaceae bacterium] diamond 495 238 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;