RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1034995" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA1034995 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2718948 2718948 PRJNA1034995_S_NODE_37103_length_221_cov_2.842697_g36947_i0 PRJNA1034995 37103 221 2.842697 6.28236037 Lobosphaera incisa 312850 Plants Plants 244 3.01e-60   NTclustered gi|821316988|ref|NC_027060.1| 312850 g36947 i0 94.872 68.5656108597285 156 8 71 0 1 156 20636 20481 Lobosphaera incisa strain SAG 2468 mitochondrion, complete genome blastn 15153 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
5271154 5271154 PRJNA1034995_S_NODE_11025_length_1219_cov_25.440476_g10441_i1 PRJNA1034995 11025 1219 25.440476 310.11940244 Prasiolopsis sp. SAG 84.81 3239232 Plants Plants 974 0   NTclustered gi|698347906|gb|KM462862.1| 1562155 g10441 i1 88.779 162.089417555373 811 70 65 16 424 1219 2066 2870 Prasiolopsis sp. SAG 84.81 chloroplast, complete genome blastn 197587 974 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiolopsis Prasiolopsis sp. SAG 84.81
11646959 11646959 PRJNA1034995_S_NODE_25650_length_310_cov_10.767790_g25494_i0 PRJNA1034995 25650 310 10.76779 33.380149 Trebouxia sp. SL0000003 3350044 Plants Plants 56.5 0.002   NTclustered gi|2917929692|emb|OZ234919.1| 3350044 g25494 i0 97.059 10.2193548387097 34 0 11 1 193 226 522909 522877 Trebouxia sp. SL0000003 genome assembly, chromosome: 14 blastn 3168 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
11647127 11647127 PRJNA1034995_S_NODE_49690_length_165_cov_4.147541_g49534_i0 PRJNA1034995 49690 165 4.147541 6.84344265 Chloroidium ellipsoideum 63676 Plants Plants 278 2.09e-70   NTclustered gi|1169296931|gb|KY364701.1| 63676 g49534 i0 96.97 17.1030303030303 165 5 100 0 1 165 5560 5396 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 2822 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;