RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1034995", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1034995 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6546478 6546478 PRJNA1034995_S_NODE_26886_length_298_cov_10.380392_g26730_i0 PRJNA1034995 26886 298 10.380392 30.93356816 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 488 1.78e-133   NTclustered gi|290979265|ref|XM_002672309.1| 5762 g26730 i0 98.901 1.74161073825503 273 3 92 0 26 298 4288 4560 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_81261), partial mRNA blastn 519 488 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15471191 15471191 PRJNA1034995_S_NODE_15753_length_473_cov_21.423256_g15602_i0 PRJNA1034995 15753 473 21.423256 101.33200088 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 852 0   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g15602 i0 99.363 35.5729386892178 471 1 99 2 1 469 875 405 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 16826 852 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;