RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1034995" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA1034995 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2718851 2718851 PRJNA1034995_S_NODE_24423_length_323_cov_19.500000_g24267_i0 PRJNA1034995 24423 323 19.5 62.985 Dinema validum 2704078 Euglenozoa other_Eukaryota 54.7 0.008   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g24267 i0 100 0.0897832817337461 29 0 9 0 4 32 5 33 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
6546478 6546478 PRJNA1034995_S_NODE_26886_length_298_cov_10.380392_g26730_i0 PRJNA1034995 26886 298 10.380392 30.93356816 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 488 1.78e-133   NTclustered gi|290979265|ref|XM_002672309.1| 5762 g26730 i0 98.901 1.74161073825503 273 3 92 0 26 298 4288 4560 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_81261), partial mRNA blastn 519 488 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7820967 7820967 PRJNA1034995_S_NODE_15747_length_473_cov_24.295349_g15596_i0 PRJNA1034995 15747 473 24.295349 114.91700077 Lepocinclis tripteris 135494 Euglenozoa other_Eukaryota 52.8 0.046   NTclustered gi|1509776293|gb|MH898669.1| 135494 g15596 i0 100 0.118393234672304 28 0 6 0 339 366 16617 16590 Lepocinclis tripteris chloroplast, complete genome blastn 56 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Phacaceae Lepocinclis Lepocinclis tripteris
14197094 14197094 PRJNA1034995_S_NODE_31352_length_259_cov_9.685185_g31196_i0 PRJNA1034995 31352 259 9.685185 25.08462915 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.024   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g31196 i0 96.875 0.123552123552124 32 0 12 1 4 34 5 36 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 32 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
15471191 15471191 PRJNA1034995_S_NODE_15753_length_473_cov_21.423256_g15602_i0 PRJNA1034995 15753 473 21.423256 101.33200088 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 852 0   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g15602 i0 99.363 35.5729386892178 471 1 99 2 1 469 875 405 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 16826 852 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;