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contig_metadata

19 rows where bioproject = "PRJNA1034994" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 19 ✖

bioproject 1

  • PRJNA1034994 · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3558163 3558163 PRJNA1034994_P_NODE_3703_length_284_cov_1.890995_g3619_i0 PRJNA1034994 3703 284 1.890995 5.3704258 root 1 Root_unresolved Root_unresolved 520 5.98e-143   NTclustered gi|388240233|emb|HE818437.1| 12242 g3619 i0 99.648 99.9964788732394 284 1 100 0 1 284 3116 2833 Tobacco mosaic virus isolate Mangshi-2, complete genome blastn 28399 520 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
9095763 9095763 PRJNA1034994_P_NODE_2268_length_341_cov_0.951493_g2184_i0 PRJNA1034994 2268 341 0.951493 3.24459113 Totiviridae sp. 1955172 Viruses Viruses 128 5.2e-25   NTclustered gi|2396039312|gb|ON812794.1| 1955172 g2184 i0 88.571 0.30791788856305 105 12 31 0 13 117 3585 3689 MAG: Totiviridae sp. isolate TIGMIC_125, complete genome blastn 105 128 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Totiviridae sp.
11646849 11646849 PRJNA1034994_P_NODE_9410_length_243_cov_0.905882_g9326_i0 PRJNA1034994 9410 243 0.905882 2.20129326 Xanthomonas phage Xoo-sp14 2769337 Viruses Viruses 427 3.11e-115   NTclustered gi|1900767118|gb|MT939492.1| 2769337 g9326 i0 98.354 1 243 4 100 0 1 243 174646 174404 Xanthomonas phage Xoo-sp14, complete genome blastn 243 427 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Xanthomonas phage Xoo-sp14
13760927 13760927 PRJNA1034994_P_NODE_3911_length_282_cov_1.124402_g3827_i0 PRJNA1034994 3911 282 1.124402 3.17081364 Viruses 10239 Viruses Viruses 516 7.67e-142   NTclustered gi|1795714992|emb|LR743529.1| 2674972 g3827 i0 99.645 16.0567375886525 282 1 100 0 1 282 13474 13193 Xanthomonas phage Sopo genome assembly, chromosome: 1 blastn 4528 516 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Xanthomonas phage Sopo
15471145 15471145 PRJNA1034994_P_NODE_9853_length_242_cov_0.911243_g9769_i0 PRJNA1034994 9853 242 0.911243 2.20520806 Pahexavirus PHL152M00 1982295 Viruses Viruses 409 1.12e-109   NTclustered gi|849255497|ref|NC_027386.1| 1500825 g9769 i0 97.119 103.301652892562 243 5 100 2 1 242 22606 22847 Propionibacterium phage PHL152M00, complete genome blastn 24999 409 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Pahexavirus PHL152M00
16745202 16745202 PRJNA1034994_P_NODE_7174_length_249_cov_2.477273_g7090_i0 PRJNA1034994 7174 249 2.477273 6.16840977 Skokie dicistro-like virus 2789443 Viruses Viruses 438 1.4799999999999996e-118   NTclustered gi|1940198090|gb|MT757477.1| 2789443 g7090 i0 98.394 4.9718875502008 249 4 100 0 1 249 216 464 Skokie dicistro-like virus strain CHNdf-3 polyprotein gene, partial cds blastn 1238 438 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
18020089 18020089 PRJNA1034994_P_NODE_3995_length_281_cov_1.153846_g3911_i0 PRJNA1034994 3995 281 1.153846 3.24230726 Varicellovirus felidalpha1 3050284 Viruses Viruses 326 1.38e-84   NTclustered gi|2777315709|gb|PQ050740.1| 10334 g3911 i0 88.406 493.281138790036 276 25 98 5 1 274 624 354 MAG: Felid alphaherpesvirus 1 isolate 4712 genomic sequence blastn 138612 326 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Varicellovirus Varicellovirus felidalpha1
20569444 20569444 PRJNA1034994_P_NODE_9097_length_244_cov_0.900585_g9013_i0 PRJNA1034994 9097 244 0.900585 2.1974274 Caudoviricetes sp. 2832643 Viruses Viruses 451 1.86e-122   NTclustered gi|2054418461|tpg|BK035692.1| 2832643 g9013 i0 100 11.9508196721311 244 0 100 0 1 244 37316 37073 MAG TPA_asm: Caudoviricetes sp. isolate ctSD610, partial genome blastn 2916 451 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
26591690 26591690 PRJNA1034994_P_NODE_6781_length_251_cov_0.865169_g6697_i0 PRJNA1034994 6781 251 0.865169 2.17157419 Caudoviricetes sp. 2832643 Viruses Viruses 65.9 3.01e-10   NR XOS27921.1 2832643 g6697 i0 47.8 0.824701195219124 69 35 82.5 1 248 42 705 772 XOS27921.1 MAG: hypothetical protein MSP0001_729 [Caudoviricetes sp.] diamond 207 65.9 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
26940065 26940065 PRJNA1034994_P_NODE_4282_length_277_cov_1.509804_g4198_i0 PRJNA1034994 4282 277 1.509804 4.18215708 Caudoviricetes sp. 2832643 Viruses Viruses 79.3 6.47e-16   NR XOQ96367.1 2832643 g4198 i0 75.5 0.530685920577617 49 12 53.1 0 130 276 4 52 XOQ96367.1 MAG: hypothetical protein [Caudoviricetes sp.] diamond 147 79.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
27129524 27129524 PRJNA1034994_P_NODE_5602_length_262_cov_1.365079_g5518_i0 PRJNA1034994 5602 262 1.365079 3.57650698 Skokie reo-like virus 2789444 Viruses Viruses 82 7.22e-16   NR QPN36930.1 2789444 g5518 i0 47.1 0.973282442748092 85 45 97.3 0 262 8 392 476 QPN36930.1 hypothetical protein, partial [Skokie reo-like virus] diamond 255 82 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales     Skokie reo-like virus
27951227 27951227 PRJNA1034994_P_NODE_1305_length_450_cov_2.405836_g1221_i0 PRJNA1034994 1305 450 2.405836 10.826262 Moloney murine leukemia virus 11801 Viruses Viruses 308 5.04e-94   NR NP_057933.2 11801 g1221 i0 99.3 4.96666666666667 149 1 99.3 0 3 449 1046 1194 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2235 308 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29434837 29434837 PRJNA1034994_P_NODE_7750_length_248_cov_0.880000_g7666_i0 PRJNA1034994 7750 248 0.88 2.1824 Caudoviricetes sp. 2832643 Viruses Viruses 63.5 1.87e-9   NR DAG78309.1 2832643 g7666 i0 67.4 0.520161290322581 43 14 52 0 129 1 157 199 DAG78309.1 MAG TPA: RNA dependent RNA polymerase [Caudoviricetes sp.] diamond 129 63.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
29813917 29813917 PRJNA1034994_P_NODE_7131_length_250_cov_0.870056_g7047_i0 PRJNA1034994 7131 250 0.870056 2.17514 Caudoviricetes sp. 2832643 Viruses Viruses 127 1.14e-33   NR XOR49676.1 2832643 g7047 i0 74.4 1.968 82 21 98.4 0 3 248 18 99 XOR49676.1 MAG: DNA ligase [Caudoviricetes sp.] diamond 492 127 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
30825001 30825001 PRJNA1034994_P_NODE_8014_length_247_cov_0.885057_g7930_i0 PRJNA1034994 8014 247 0.885057 2.18609079 Caudoviricetes sp. 2832643 Viruses Viruses 102 5.539999999999999e-23   NR DAV06963.1 2832643 g7930 i0 65.4 0.983805668016194 81 28 98.4 0 244 2 1572 1652 DAV06963.1 MAG TPA: Putative tail protein [Caudoviricetes sp.] diamond 243 102 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
31615354 31615354 PRJNA1034994_P_NODE_4116_length_279_cov_1.495146_g4032_i0 PRJNA1034994 4116 279 1.495146 4.17145734 Arthrobacter phage Atuin 2885972 Viruses Viruses 60.5 3.31e-8   NR UDL16767.1 2885972 g4032 i0 38 1.0752688172043 100 52 96.8 1 278 9 588 687 UDL16767.1 hypothetical protein SEA_ATUIN_74 [Arthrobacter phage Atuin] diamond 300 60.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Arthrobacter phage Atuin
31615356 31615356 PRJNA1034994_P_NODE_5056_length_268_cov_1.543590_g4972_i0 PRJNA1034994 5056 268 1.54359 4.1368212 Siphoviridae sp. ct9lR64 2826178 Viruses Viruses 130 1.0099999999999999e-32   NR DAE23794.1 2826178 g4972 i0 77.9 0.962686567164179 86 19 96.3 0 259 2 434 519 DAE23794.1 MAG TPA: RNA dependent RNA polymerase [Siphoviridae sp. ct9lR64] diamond 258 130 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Siphoviridae sp. ct9lR64
32058214 32058214 PRJNA1034994_P_NODE_4298_length_277_cov_1.446078_g4214_i0 PRJNA1034994 4298 277 1.446078 4.00563606 Vibrio phage TCU-VP 3141804 Viruses Viruses 72.4 4.15e-13   NR WZW72986.1 3141804 g4214 i0 47.1 2.28519855595668 68 33 70.4 1 238 44 150 217 WZW72986.1 homing endonuclease [Vibrio phage TCU-VP03-AIR1] diamond 633 72.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Pantevenvirales Straboviridae Schizotequatrovirus Vibrio phage TCU-VP03-AIR1
32808406 32808406 PRJNA1034994_P_NODE_900_length_548_cov_2.313684_g816_i0 PRJNA1034994 900 548 2.313684 12.67898832 Gammaretrovirus 153135 Viruses Viruses 382 1.0899999999999994e-119   NR ABU54795.1 11786 g816 i0 99.5 12.9361313868613 182 1 99.6 0 1 546 664 845 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 7089 384 0.994791666666667 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;