RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1034994", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1034994 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7820896 7820896 PRJNA1034994_P_NODE_5627_length_261_cov_2.377660_g5543_i0 PRJNA1034994 5627 261 2.37766 6.2056926 Fretibacterium fastidiosum 651822 Bacteria Bacteria 244 3.66e-60   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g5543 i0 83.588 21.1072796934866 262 41 100 2 1 261 69686 69946 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 5509 244 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
19294060 19294060 PRJNA1034994_P_NODE_5816_length_260_cov_0.919786_g5732_i0 PRJNA1034994 5816 260 0.919786 2.3914436 Fretibacterium fastidiosum 651822 Bacteria Bacteria 339 1.62e-88   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g5732 i0 90.494 316.65 263 15 99 9 3 260 68900 68643 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 82329 339 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;